Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00540 ATGATTGTCTGCAAGCTTAGTCATTTACAGCCCAGCCAGACACAGGCGACGTCAAATTTCATACCCTTTTCTCAGCTTCAACAGCAGCGGAAGCTCTTAGAATGGCGACTCATAAGTATTCTCCACGACTGCACGGACTTTTCTCAAATCAAGCAAGTTCATGGCCAAATCATTTGCAATGGCTTGAGTCAATGCTCTTACGTCCTCACCAAACTCATTCGCATGCTTTCGAAGGTAGATGTCCCAATGGATTGCTACCCACGTCTGGTTTTTGGACAGGTTAATTACCCCAACCCCTTTCTTTGGACTGCCATGATTCGTGGGTATGCCCTTCAAGGACCCTTCACTGAGTCTATTAACTTGTATACTAACATGAGGAGAAATGGCGTCAGTCCTGTTTCGTTTACGTTTTCTGCGCTTTTTAAGGCTTGTGGGGCTTCTCTTAATTTGGATTTGGGTAGGCAGGATGTCGGTATCGAGACCGATGAAGTTACACTTGTTGGTGTCATCTCAGCCTGTGCACAATTGGGTGCAGCAGGCAGCTCTACAAGCTAA 555 46.13 MIVCKLSHLQPSQTQATSNFIPFSQLQQQRKLLEWRLISILHDCTDFSQIKQVHGQIICNGLSQCSYVLTKLIRMLSKVDVPMDCYPRLVFGQVNYPNPFLWTAMIRGYALQGPFTESINLYTNMRRNGVSPVSFTFSALFKACGASLNLDLGRQDVGIETDEVTLVGVISACAQLGAAGSSTS 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3403281 3407259 - Cp4.1LG14g01760.1 Cpe14g00540 480924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00540 184 TIGRFAM PPR: pentatricopeptide repeat domain 101 132 IPR002885 -
Cpe14g00540 184 Gene3D Tetratricopeptide repeat domain 35 182 IPR011990 GO:0005515
Cpe14g00540 184 PANTHER BNAC09G18050D PROTEIN 157 179 - -
Cpe14g00540 184 Pfam PPR repeat family 97 144 IPR002885 -
Cpe14g00540 184 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 157 179 - -
Cpe14g00540 184 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 98 132 IPR002885 -
Cpe14g00540 184 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 149 - -
Cpe14g00540 184 PANTHER BNAC09G18050D PROTEIN 9 149 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00540 - - - cmo:103493215 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00540 Cpe-Chr14:3403281 Cpe01g02401 Cpe-Chr1:20022449 1.69E-17 dispersed
Cpe14g00540 Cpe-Chr14:3403281 Cpe08g01246 Cpe-Chr8:9019319 4.56E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1035 . . . . . . . . . Cmo16g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01258 . . . . . . . Bma03g00979 . . . . Cma16g00633 . . . . Cpe14g00540 . . . . . . . Cla07g00830 . . . . . . Lsi07g00239 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012740 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00540 Cpe_Chr14 FPKM 32.63063 33.369541 18.455627 19.416801 28.167089 23.602165 25.27652 40.310654 43.500969 42.47049
Cpe14g00540 Cpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0