Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00550 ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAGCTCTGTTTTCGCGATAATGGCTGTTTTAATCACCAGAATCTTCCCACCTCCGATGATTTCTTTGTCGACCAACTCCTCGATTTCTCCAATGATGATCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCACGACGACTCTGTTTCTCTTTCCGGTCGAGAAATTCATCAGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAACCAACCGAGCAACGGTGGTTCCATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAACCAAACGGACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAATCGTTATCAGAAAAGCCCAAAACCAACGTCGGAGCTCAGCCTCCACGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG 957 52.04 MECVDGALEILQLSPQLCFRDNGCFNHQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGREIHQNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDNQPSNGGSISPPENCFKTPIPVKARTKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTNVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3491573 3493071 + Cp4.1LG14g01630.1 Cpe14g00550 480934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00550 318 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cpe14g00550 318 MobiDBLite consensus disorder prediction 181 246 - -
Cpe14g00550 318 MobiDBLite consensus disorder prediction 134 166 - -
Cpe14g00550 318 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 CDD ZnF_GATA 238 286 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 MobiDBLite consensus disorder prediction 181 201 - -
Cpe14g00550 318 Gene3D - 230 306 IPR013088 GO:0006355|GO:0008270
Cpe14g00550 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cpe14g00550 318 MobiDBLite consensus disorder prediction 134 150 - -
Cpe14g00550 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
Cpe14g00550 318 PIRSF Txn_fac_GATA_plant 11 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe14g00550 318 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00550 - - - cmax:111483139 556.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00222 Cpe-Chr5:1252047 Cpe14g00550 Cpe-Chr14:3491573 2.13E-08 dispersed
Cpe05g01292 Cpe-Chr5:9021238 Cpe14g00550 Cpe-Chr14:3491573 3.43E-61 dispersed
Cpe12g00660 Cpe-Chr12:6422073 Cpe14g00550 Cpe-Chr14:3491573 1.10E-50 dispersed
Cpe14g00550 Cpe-Chr14:3491573 Cpe16g00276 Cpe-Chr16:4752379 1.56E-52 dispersed
Cpe10g00648 Cpe-Chr10:3733494 Cpe14g00550 Cpe-Chr14:3491573 1.04E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00511 CCT,ECH 66 328 C2C2-Gata Transcription Factor Family AT5G25830 51.9 1.7e-60 230.3
Cpe06g00489 CCT,CST,ECH 59 320 C2C2-Gata Transcription Factor Family AT5G25830 51.4 1.0e-57 221.1
Cpe14g00550 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.7 8.5e-63 238.0
Cpe10g00648 . 108 291 C2C2-Gata Transcription Factor Family AT5G66320 50.9 2.7e-45 179.9
Cpe06g00489 CCT,CST,ECH 48 317 C2C2-Gata Transcription Factor Family AT4G32890 50.4 1.1e-53 207.6
Cpe07g00206 CCT,CST,ECH 49 247 C2C2-Gata Transcription Factor Family AT4G32890 50.5 8.3e-41 164.9
Cpe05g00222 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.5 5.3e-133 471.9
Cpe08g00714 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.6 2.6e-132 469.5
Cpe15g00304 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 50.7 3.7e-126 449.1
Cpe08g00714 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 5.6e-113 405.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50520 PF00320 GATA 1.40E-15 CL0167 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00550 Cpe_Chr14 FPKM 62.590683 70.546814 16.210209 16.517229 59.769203 60.826313 61.314415 7.827314 6.965508 8.020948