Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00550 ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAGCTCTGTTTTCGCGATAATGGCTGTTTTAATCACCAGAATCTTCCCACCTCCGATGATTTCTTTGTCGACCAACTCCTCGATTTCTCCAATGATGATCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCACGACGACTCTGTTTCTCTTTCCGGTCGAGAAATTCATCAGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCCTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAACCAACCGAGCAACGGTGGTTCCATTTCGCCGCCGGAGAACTGTTTCAAAACCCCCATTCCGGTTAAGGCTAGAACCAAACGGACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCCAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTTCGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAATCGTTATCAGAAAAGCCCAAAACCAACGTCGGAGCTCAGCCTCCACGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTAACCTTAGAACAGAAATAG 957 52.04 MECVDGALEILQLSPQLCFRDNGCFNHQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGREIHQNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDNQPSNGGSISPPENCFKTPIPVKARTKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRFEPEIPKKKPRRKSLSEKPKTNVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3491573 3493071 + Cp4.1LG14g01630.1 Cpe14g00550 480934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00550 318 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cpe14g00550 318 MobiDBLite consensus disorder prediction 181 246 - -
Cpe14g00550 318 MobiDBLite consensus disorder prediction 134 166 - -
Cpe14g00550 318 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 CDD ZnF_GATA 238 286 IPR000679 GO:0006355|GO:0043565
Cpe14g00550 318 MobiDBLite consensus disorder prediction 181 201 - -
Cpe14g00550 318 Gene3D - 230 306 IPR013088 GO:0006355|GO:0008270
Cpe14g00550 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cpe14g00550 318 MobiDBLite consensus disorder prediction 134 150 - -
Cpe14g00550 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
Cpe14g00550 318 PIRSF Txn_fac_GATA_plant 11 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cpe14g00550 318 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00222 Cpe-Chr5:1252047 Cpe14g00550 Cpe-Chr14:3491573 2.13E-08 dispersed
Cpe05g01292 Cpe-Chr5:9021238 Cpe14g00550 Cpe-Chr14:3491573 3.43E-61 dispersed
Cpe12g00660 Cpe-Chr12:6422073 Cpe14g00550 Cpe-Chr14:3491573 1.10E-50 dispersed
Cpe14g00550 Cpe-Chr14:3491573 Cpe16g00276 Cpe-Chr16:4752379 1.56E-52 dispersed
Cpe10g00648 Cpe-Chr10:3733494 Cpe14g00550 Cpe-Chr14:3491573 1.04E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50520 PF00320 GATA 1.40E-15 CL0167 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00550 - - cmax:111483139 556.214