Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00553 ATGAGAGTTCCTGTTTCCAATCACCACTCATCCAAACCCCCCTCCTCTGCTCCTGCCCCAAATCCTAAGCTCGACTCCTCCCNCCCCGGTTACGAACCCACCTCCGTCCTCGATCTCCGCCGCAGCCCCAGCCCCGTGGCGCCAGATAACCCCCTCTCCTCCGCTGACGATCGTCACAACAACAGCCATCCTCTGGACTGGGATGAACGCACTCTCCAGAACCTTGACTGGGAATCCATCATGGGCGATTTGGGCGTAAACGATGACTCCAATTCTGCTCTCAAGAACACCACCGCCGCCACCACCACCACCGACGACAATACCCACGATCATGTTCCTCAATTTTCCGAATTCCTTCACTCCCAGCCGTTCGATCAAACCGCCCACCTCCTCCCCTCTGATTTCTTCCTCTCCGAACCATATTCCAATCATTCCGCCGCTATGCTCCACCACACCTTCGATTTCGCCCCCAATTCCAACGACCCATCTCTCCATTTCCTCGAAGATCTCGTCGACGCCGCCGATTGCTTCGATTCCAATGATTTCCATCTCGCTCATGTCATATTAGAACGGCTCAATCACCGCCTTCAATCCGCCTCCTCCGCCAAACCCCTTCACCGGGCCGCCTTCTTCTTCAAAGAAGCTCTTCAATCTCTCCTCTCCGCCGCCGCCAACCGCCATAACTCCTCCTCTTCCTGGCCCGACATCGTCCATACTATTAAGGCCCATAAGGCCTTCTCTGCAATTTCTCCGATTCCCCTGTTTTCCCACTTCACCACCAATCAAATCCTTCTCGAAGCTCTCAACGCTTCCTCTTTCATTCATATAATTGATTTCGACATCGGGTTTGGTGGGCAGTACGCCTCTTTTATGAAGGAGTTAGCTGATAAAGCAGAATCCAGAAACGTCGTTCCGCCGGTGATTCGAATTACCGCCGTCGTGTTTGAGGAATTTGCGGTGGAGAGTCGGTTGACTAGAGAGAATCTCTGCCAGTTTGCTCAAGATTTGAAGCTCCGATTTCATATTGATCTTGTGCCGCTTCAGACTTTCAAGACGTTGTCGTTCAAATCGGTGAAATTCATGGAAGGGGAGAAGGTGGCGATTCTGTTAACTCCGACCATCTTCCGCCGTCTCGGGAGTTCTAATGGCATAGCCTCTTTTCTCGCCGACGTGCGATTAGTGTCTCCGTGCATCGTCGTGTTCGTCGATTTCGAAGGATGGTCGGATTCCGGCAAGGCGTCGTTCAAGAGGAATTTATTGGATAGTCTGGAGTTTTACGCCATGATGCTCGAGTCGCTGGATGCGGCAGGGGCCGACGGCGAGTGGGTGCGGCGGATTGAGACGTTTGTTCTTCGGCCGAAGATTTTGGCGGCGGTCGAAGGAGCAGGGAGAATGGCGGTGCCGCCGTGGAGGGAGGTGTTCCACTCGGTCGGAATGAGGCCGGTGGCGCTGAGTCAGTTTGCCGATTTTCAAGCAGAGTGCTTACTTGGCAAAGTACAGGTCCGAGGGTTCCAAGTTGGCAAACGGCATGCTGAGCTGGTGCTGTGCTGGCATGAGAGACCTCTGGTCGCCACGTCCGCGTGGAGGTGTTAA 1593 54.05 MRVPVSNHHSSKPPSSAPAPNPKLDSSXPGYEPTSVLDLRRSPSPVAPDNPLSSADDRHNNSHPLDWDERTLQNLDWESIMGDLGVNDDSNSALKNTTAATTTTDDNTHDHVPQFSEFLHSQPFDQTAHLLPSDFFLSEPYSNHSAAMLHHTFDFAPNSNDPSLHFLEDLVDAADCFDSNDFHLAHVILERLNHRLQSASSAKPLHRAAFFFKEALQSLLSAAANRHNSSSSWPDIVHTIKAHKAFSAISPIPLFSHFTTNQILLEALNASSFIHIIDFDIGFGGQYASFMKELADKAESRNVVPPVIRITAVVFEEFAVESRLTRENLCQFAQDLKLRFHIDLVPLQTFKTLSFKSVKFMEGEKVAILLTPTIFRRLGSSNGIASFLADVRLVSPCIVVFVDFEGWSDSGKASFKRNLLDSLEFYAMMLESLDAAGADGEWVRRIETFVLRPKILAAVEGAGRMAVPPWREVFHSVGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWRC 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3510614 3512206 - Cp4.1LG14g01580.1 Cpe14g00553 480937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00553 530 MobiDBLite consensus disorder prediction 85 109 - -
Cpe14g00553 530 MobiDBLite consensus disorder prediction 1 67 - -
Cpe14g00553 530 ProSiteProfiles GRAS family profile. 157 529 IPR005202 -
Cpe14g00553 530 PANTHER SCARECROW-LIKE PROTEIN 15 26 529 - -
Cpe14g00553 530 MobiDBLite consensus disorder prediction 82 110 - -
Cpe14g00553 530 Pfam GRAS domain family 168 529 IPR005202 -
Cpe14g00553 530 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 26 529 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00553 - - - csv:116401665 802.357
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00553 Cpe-Chr14:3510614 Cpe14g00948 Cpe-Chr14:7988889 1.35E-68 dispersed
Cpe01g00671 Cpe-Chr1:3925065 Cpe14g00553 Cpe-Chr14:3510614 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g933 Blo04g00926 . . . Bpe15g00438 . . . Cmo04g00840 Cmo16g00706 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0754 . . . . Chy07g01294 . . . . . . . . . . . . Cma16g00649 . . . . Cpe14g00553 . . . . . . . Cla07g00854 Cam07g0926 Cec07g0991 Cco07g0968 Clacu07g0901 Cmu07g0901 Cre07g1267 Lsi07g00218 Csa04g00523 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004174 0 0 1 0 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 2 1 1 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50521 PF03514 GRAS 1.80E-86 CL0063 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00553 Cpe_Chr14 FPKM 1.176429 2.522087 1.945144 1.427492 0.0 0.0 0.0 0.0 0.0 0.0