Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe14g00555 | ATGCCGACGGATTTAGAAACTTCCGGTGAAGCCAGTATCTCCTCCACTGGAAATCAGCCTCCGCCGCCTAAATCCGCCGTGAAAAAGAAGCGTAATTTACCAGGAATGCCAGATCCGGAAGCAGAGGTAATTGCTCTGTCACCGGAAACCCTTTTGGCCACAAATCGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTACACCGGCGAGGTCATAATCTTCCATGGAAACTCCGGCAACGAACGAGCAAAGAAGTGAAAAAGAAAGTGTATGTCTGCCCAGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGCCGGAAACACAGCGAGAAGAAGTGGAAGTGCGACCGGTGCTCCAAGAAATACGCAGTCAAGTCGGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTACAGATGTGACTGTGAAACTGTGTTTTCAAGACGAGATAGTTTCATCACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAAGCCGCCGTAACTCTGTCTCCGGCGACGGCGGAGATTCCTAATTTGGAGTCCGATCCCCAAGTTCAGCCACCGAATTGTTCGTCTCCGCCGCCTACTGCTGCTTCTCTTTCCGCCACTTCCGCCGCCGCCGCCGCCCCAGTAGCTCCTCCATCATCCACTGAAGCGATATCTTCAATCTCGTCCATTCAGAAAAAAGCCTCGCCGGGAAATCCTCCGCCGCCGCTAGAAGAGGCACCAGGTAAAACGACCGTACCTAGCACCTCCAGCAGCAGCAACGCGACAGTATTGGCTAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCACCGCAGCAGCCCGGATTTTGCGACTTATTACGAGCCATGGCGCGACCCGATCGGGAGGCCGAAATAACACCGCCGTTGGTTTTTGAACCACTTTCTCTATGCCTGTCGAACCACAGCGAATGGTCGCTTTTCGGAGCCGGAATCCAAGAAAGTCGCCCATACGTGCCGCCAACGCCACCGGCCATGTCCGCCACTGGGCTCCTGCAGAAGGCCGCTCAAATGGGTGCTGCTGCAGCGGCCAGCACATCAGTGTTTCGTGGATTTGGTTTGTCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA | 1203 | 53.37 | MPTDLETSGEASISSTGNQPPPPKSAVKKKRNLPGMPDPEAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHSEKKWKCDRCSKKYAVKSDWKAHSKICGTREYRCDCETVFSRRDSFITHRAFCDALTKEAAVTLSPATAEIPNLESDPQVQPPNCSSPPPTAASLSATSAAAAAPVAPPSSTEAISSISSIQKKASPGNPPPPLEEAPGKTTVPSTSSSSNATVLASLFASSAASLSLQPPQQPGFCDLLRAMARPDREAEITPPLVFEPLSLCLSNHSEWSLFGAGIQESRPYVPPTPPAMSATGLLQKAAQMGAAAAASTSVFRGFGLSSSSSSAQQGSL | 400 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 3522231 | 3524694 | - | Cp4.1LG14g01600.1 | Cpe14g00555 | 480939 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe14g00555 | 400 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
| Cpe14g00555 | 400 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
| Cpe14g00555 | 400 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 153 | IPR036236 | - | |
| Cpe14g00555 | 400 | Gene3D | Classic Zinc Finger | 37 | 104 | - | - | |
| Cpe14g00555 | 400 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cpe14g00555 | 400 | MobiDBLite | consensus disorder prediction | 201 | 225 | - | - | |
| Cpe14g00555 | 400 | Pfam | Zinc-finger of C2H2 type | 57 | 79 | - | - | |
| Cpe14g00555 | 400 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
| Cpe14g00555 | 400 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 2-LIKE | 7 | 396 | - | - | |
| Cpe14g00555 | 400 | MobiDBLite | consensus disorder prediction | 241 | 276 | - | - | |
| Cpe14g00555 | 400 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 7 | 396 | - | - | |
| Cpe14g00555 | 400 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
| Cpe14g00555 | 400 | SMART | c2h2final6 | 133 | 153 | IPR013087 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe14g00555 | Cpe19g00801 | CCT | |
| Cpe10g00600 | Cpe14g00555 | CCT | |
| Cpe14g00555 | Cpe19g00801 | ECH | |
| Cpe10g00600 | Cpe14g00555 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe10g00598 | Cpe-Chr10:3500010 | Cpe14g00555 | Cpe-Chr14:3522231 | 1.34E-133 | dispersed | |
| Cpe10g00600 | Cpe-Chr10:3504977 | Cpe14g00555 | Cpe-Chr14:3522231 | 2.18E-139 | dispersed | |
| Cpe14g00555 | Cpe-Chr14:3522231 | Cpe19g00802 | Cpe-Chr19:6041014 | 1.26E-19 | dispersed | |
| Cpe14g00555 | Cpe-Chr14:3522231 | Cpe19g00801 | Cpe-Chr19:6035762 | 4.78E-118 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 50522 | PF12874 | zf-met | 0.0027 | CL0361 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe14g00555 | K25869 | - | csv:101215476 | 545.428 |