Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00557 ATGTCCTCCATCGCCACCCGCCACATCCGTCGTCTATCGACGGCAGCCACCGCCACCGCCACCGCAACCGCTGCTGCTAAGGCCACAGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACCGAGTATGATCCAGATAAAGCTCTGAACATTTACTCTTCTGTTTCCAGTCACTACACTTCCCCTGTCTCCTCTCGCTATGCTCAGGAACTCACCATTCGGCGCCTTGCAAAGTCTCGTCGATTCGATGACATCGAATCCCTGATCGAATCCCATAAAAATGACCCGAAGATCACTCAGGAGCCCTTTTTGTCCACCTTGATTCGATCCTACGGTCGAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGAAGATTTCGGCACTCCTCGATCGGTGATTTCCTTCAATGCGCTATTATGTGCATTTAACCATTCGAAGCAATTCGACAAAGTTCCTCAACTGTTCGATGAAATTCCGAAGAAATACAGTTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTCAAATCCTATTGCGAATCCGGTTCCCCTGAAAAGGCCATGCAAATCGTAAGGGAGATGGAGGAAAACGATGTGGAGGTAACTGCGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGCGAGAGCGAAGAGGCAGAGAAAATCTGGAACAAGATGATATCAAAAGGGTGTGAACTCGATGTGGGTGCCTATAACGTTAGATTGATGCACGAGCACGGCGGCAAGCCAGAACACGTTGAAGCATTGATCGAGGAAATGGCTAATTCAGGTATGAAACCCGACACCATTAGCTATAATTACTTAATGACTTGTTATTGCAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGATAAATGGGTGTAACAAGAACGCTGCAACTTTTAGAACATTTATGTATTACCTCTGTAGAAATGGGGATTATGAAAAAGGGTATATGGTTTTCAAGGAGAGTGTGAAGGTTCATAAGATTCCTGATGTTAACACAGTGAAGTATTTGGTGGAGGGGCTGATGGAGAAGAAGAAGATGAAAGAGGCCAAGGGTTTAATCAGGACCATAAGGAAGAAGTTCCCTCCTGATTCTTTGAAGGCCTGGAGAAAAGTTGAGGAGGCTCTTGGTTTGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAGGCTGATGATGAAACTGAAGAATAA 1257 44.79 MSSIATRHIRRLSTAATATATATAAAKATATTSSSISISKAKSKLRTEYDPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGRAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLFDEIPKKYSFSPNKISYGILVKSYCESGSPEKAMQIVREMEENDVEVTAVTFTTILDALYKKGESEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKAWRKVEEALGLASSSSSSSSSSKADDETEE 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3539003 3540259 + Cp4.1LG14g01660.1 Cpe14g00557 480941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00557 418 SUPERFAMILY TPR-like 152 344 IPR011990 GO:0005515
Cpe14g00557 418 Gene3D Tetratricopeptide repeat domain 2 166 IPR011990 GO:0005515
Cpe14g00557 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Cpe14g00557 418 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 7 406 - -
Cpe14g00557 418 Pfam PPR repeat 111 137 IPR002885 -
Cpe14g00557 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Cpe14g00557 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Cpe14g00557 418 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cpe14g00557 418 Gene3D Tetratricopeptide repeat domain 167 256 IPR011990 GO:0005515
Cpe14g00557 418 Gene3D Tetratricopeptide repeat domain 257 417 IPR011990 GO:0005515
Cpe14g00557 418 SUPERFAMILY TPR-like 281 385 IPR011990 GO:0005515
Cpe14g00557 418 TIGRFAM PPR: pentatricopeptide repeat domain 111 138 IPR002885 -
Cpe14g00557 418 TIGRFAM PPR: pentatricopeptide repeat domain 319 345 IPR002885 -
Cpe14g00557 418 TIGRFAM PPR: pentatricopeptide repeat domain 143 177 IPR002885 -
Cpe14g00557 418 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Cpe14g00557 418 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Cpe14g00557 418 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Cpe14g00557 418 PANTHER BNAA09G52830D PROTEIN 7 406 - -
Cpe14g00557 418 Pfam PPR repeat family 213 253 IPR002885 -
Cpe14g00557 418 Pfam PPR repeat family 280 323 IPR002885 -
Cpe14g00557 418 Pfam PPR repeat family 141 189 IPR002885 -
Cpe14g00557 418 MobiDBLite consensus disorder prediction 398 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00557 - - - cmos:111435912 750.355
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00902 Cpe-Chr9:8194855 Cpe14g00557 Cpe-Chr14:3539003 8.04E-61 dispersed
Cpe10g00806 Cpe-Chr10:4571663 Cpe14g00557 Cpe-Chr14:3539003 2.27E-62 dispersed
Cpe14g00557 Cpe-Chr14:3539003 Cpe20g00374 Cpe-Chr20:2108000 3.94E-66 dispersed
Cpe14g00557 Cpe-Chr14:3539003 Cpe03g01134 Cpe-Chr3:9283720 9.56E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00557 Cpe_Chr14 FPKM 174.873566 202.368591 168.508682 175.852478 147.147064 126.734741 140.924118 297.211365 310.62616 285.320343