Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00559 ATGGCTCTCGAGGAGAAACCAAGAGCTGATAATTCTGCAGAGTCACCGACCTCGGTTCTGGAAGACGAGGATATATGTAATGGGGAAAATGAGATCAAGTTGGAGGAAAAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTTATATCAAAAGAAATGGCAGAGGAGGAACAGAAATTGCTGGAAGCTCGGGTTAAGGATGAGGAGGCCGAGAAACTTGAGGATTCAAAAGAATCTGCAAAGTTGAATGACAATCAGTTTACCAAATTGGACGAACTTCTCACTCAAACACAGTTGTACTCAGAATTTTTGCTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGAGAATAAATCTGTTGAGAAAAGTAATGTTCGTGGTTCAAAGAGGAAAGCTGCTCCACGTTATAATAATAGGAAGGCAAAAAGAGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGTGACGAAGATGAGAACTTGACCGAGGAAGAAAGAATCGAGAAGGAGCAGAGTGAACTTGTACCTCTGTTGACTGGTGGCAAATTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTAATCTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATCTGAAAGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACAGTGAATGCTATTATTTATCATGGTAACAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAAAACAATTGGACCTAACTTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAAGTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATAGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAATTGAAGTACATAACTGTTGAAAATAAACTGCTTCTTACTGGGACACCACTGCAGAATAATTTGGCTGAGCTTTGGTCGTTGTTGAACTTTATTTTACCAGATATTTTTTCGTCCAATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGAGTCATGCTGAAGAACAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGCAATACTGAGACCATTTCTACTTCGGAGAATGAAATCCGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATTATATTGTATGCAACCATGACCGAGTGTCAGAAGAACTTTCAGGAACATTTAATTAACAAGACGTTGGAAAGTCATCTCTCCGAGAAGGGATCAGGCCATGTTTTGAAAGGAAAGCTTAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGACCTCCTGGAATCAGTTTTTGATGAATCATATACATATCCTCCTGTAGAGCAGATAGTAGAGCAGTGTGGCAAATTTCGCTTACTGGATAGATTGTTGACACGACTGTTAGCACGCAAGCATAAAGTCCTTATCTTCTCTCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTAATGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAACTACAGGATATTCATTCTAAGCACCCGAGCTGGTGGTCTGGGTATCAACCTTACTGCAGCAGATACCTGTATACTCTATGACAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGATGTCACAGGATTGGTCAAACAAAACCCGTACACGTTTACAGACTTGCAACAGCTCAGTCTGTAGAGGGCCGCATTCTGAATAGGGCATTTAGTAAGTTGAAGCTTGAGCATGTTGTCATCGAGAAGGGGCAATTTCATCAGGAACGAACTAAACCCAACTCTGGAGCTATTATAGAGGAAGAGGATCTGCTGGCACTACTAAGGAAGGAAGATTCTGCTGAAGATAAGATGATACAAACAGACATTAGCGATGCTGATTTGGAGCGTATTTTAGACCGCTCCGACCTGCTTCCCCCGTCTGGTTCAGACGACGAGAAATCGAAAGTTTCTGGTGATTTATACCCCCTCAAAGGGCCTGGTTGGGAGGTGGTGATACCAACTTCAACAGGAGGGGTACTCTCTACACTCAACGCTTAA 2274 41.34 MALEEKPRADNSAESPTSVLEDEDICNGENEIKLEEKIILEAKNGDSSLISKEMAEEEQKLLEARVKDEEAEKLEDSKESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEENKSVEKSNVRGSKRKAAPRYNNRKAKRAVAAMLTRSKEGERDEDENLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTVNAIIYHGNKKQREEIRRKSMPKTIGPNFPIVVTSYEIAMSDAKKVLRHYNWKYLVVDEGHRLKNSKCKLLKELKYITVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKSHAEEQEETQENRKAQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIILYATMTECQKNFQEHLINKTLESHLSEKGSGHVLKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQIVEQCGKFRLLDRLLTRLLARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGNVKLDERKRQIQEFNDVNSNYRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILNRAFSKLKLEHVVIEKGQFHQERTKPNSGAIIEEEDLLALLRKEDSAEDKMIQTDISDADLERILDRSDLLPPSGSDDEKSKVSGDLYPLKGPGWEVVIPTSTGGVLSTLNA 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3543854 3550982 + Cp4.1LG14g01690.1 Cpe14g00559 480943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00559 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 418 IPR027417 -
Cpe14g00559 757 Coils Coil 52 84 - -
Cpe14g00559 757 SMART ultradead3 185 380 IPR014001 -
Cpe14g00559 757 PANTHER SNF2/RAD54 HELICASE FAMILY 12 756 - -
Cpe14g00559 757 CDD SF2_C_SNF 500 634 - -
Cpe14g00559 757 Pfam Helicase conserved C-terminal domain 514 624 IPR001650 -
Cpe14g00559 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Cpe14g00559 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 712 IPR027417 -
Cpe14g00559 757 Gene3D - 190 419 IPR038718 -
Cpe14g00559 757 Pfam SNF2-related domain 192 488 IPR000330 GO:0005524|GO:0140658
Cpe14g00559 757 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 12 756 - -
Cpe14g00559 757 MobiDBLite consensus disorder prediction 1 26 - -
Cpe14g00559 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 514 677 IPR001650 -
Cpe14g00559 757 Gene3D - 424 719 IPR027417 -
Cpe14g00559 757 SMART helicmild6 540 624 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00559 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1356.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01211 Cpe-Chr10:9047425 Cpe14g00559 Cpe-Chr14:3543854 2.05E-39 dispersed
Cpe14g00559 Cpe-Chr14:3543854 Cpe17g00005 Cpe-Chr17:38449 5.36E-147 dispersed
Cpe19g00041 Cpe-Chr19:301841 Cpe14g00559 Cpe-Chr14:3543854 2.04E-36 dispersed
Cpe01g00882 Cpe-Chr1:5177853 Cpe14g00559 Cpe-Chr14:3543854 2.81E-87 transposed
Cpe01g00666 Cpe-Chr1:3892982 Cpe14g00559 Cpe-Chr14:3543854 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50523 PF00176 SNF2_N 6.50E-64 CL0023 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00559 Cpe_Chr14 FPKM 12.996435 13.199065 15.652556 16.810276 14.136346 13.265604 15.823568 19.089825 19.651451 23.279572