Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00560 ATGTGGCGCTGTGTTTCTCGTGGCCTTCGCGCTTCTTCTTCTTCCTTTTCTAGGAAATCGTCGCCTAATGATCACCTCAGATCTCACTTTTCTAGATTCTTCTCCGATTCGACGGCAGGTCGCTCGTCATATACTGTGGTTGATCACACATACGATGCGGTTGTGGTAGGAGCCGGTGGTGCAGGGCTTCGAGCTGCTATAGGATTGTCAGAACATGGATTTAATACTGCCTGCATTACTAAGCTTTTCCCAACTCGATCTCACACTGTTGCAGCTCAGGGAGGTATTAATGCTGCACTGGGGAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGCGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCAAAAGCAGTTATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGAGGGAAAAATATATCAACGTGCATTTGGTGGTCAGAGCCTCGACTTTGGAAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCTGACCGAACGGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAATTTTTTGTGGAATATTTTGCTTTGGATCTTTTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATACAGAGGATGGTACACTACATCGGTTCCAAGCTGCATCAACAATTTTAGCTACTGGGGGTTATGGCAGAGCATATTTCTCTGCAACCTCTGCTCATACCTGTACTGGAGATGGAAATGCCATGGTTGCACGTGCTGGGCTTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACAGGAATATATGGTGCTGGATGCCTTATTACTGAAGGATCTCGTGGTGAAGGAGGCATTCTTAGGAACAGTGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGACGTTGTCTCAAGATCCATGACGATGGAAATTCGGGAGGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTTCATTTAAATCACTTACCCCCTGAGGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAGCCCATTCCAGTGTTACCTACAGTGCATTATAATATGGGTGGAATTCCAACTAATCATCATGGAGAGGTAGTTACAATCAAGGGCAATGATCCAGATGCTGTAATTCCAGGATTGATGGCGGCTGGGGAGGCAGCTTGTGCCTCGGTTCACGGTGCAAATAGGCTTGGTGCAAATTCCCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTAGCAGAGATCAGGGCAAAGCAAAAGCCGTTGGAAAATGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAATTAAGGAACGCAAATGGTTCACTTCCCACCTCAAATATTCGGTTGAACATGCAACGAATTATGCAAAACAATGCTGCTGTCTTCCGAACTCAGGAGACCTTGGAAGAAGGTTGCAAATTAATTGACAAGACATGGGAGAGTTTCCATGATGTGAAGGTCAAGGACAGGAGTTTAATATGGAACACTGATTTGATTGAGACAATTGAATTGGAAAATCTTTTGATCAATGCCTCTATTACCATGCACTCTGCTGAAGCCAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGATTTCACAACAAGAGATGATGTGAACTGGATGAAGCACACATTGGGATTCTGGGAGAATGAGAAGGTCAGGCTGGACTATAGGCCAGTGCACATGAACACATTGGACGATGAGATGGAAACAATCCCTCCCAAGGCCCGTGTATACTGA 1899 45.81 MWRCVSRGLRASSSSFSRKSSPNDHLRSHFSRFFSDSTAGRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNTEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIRAKQKPLENDAGEKTIAWLDKLRNANGSLPTSNIRLNMQRIMQNNAAVFRTQETLEEGCKLIDKTWESFHDVKVKDRSLIWNTDLIETIELENLLINASITMHSAEARKESRGAHAREDFTTRDDVNWMKHTLGFWENEKVRLDYRPVHMNTLDDEMETIPPKARVY 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3552498 3558204 + Cp4.1LG14g01680.1 Cpe14g00560 480944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00560 632 PIRSF SDHA_APRA_LASPO 42 622 - -
Cpe14g00560 632 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 280 398 IPR027477 -
Cpe14g00560 632 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 49 632 IPR011281 GO:0006099|GO:0016627|GO:0050660
Cpe14g00560 632 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 491 632 IPR037099 GO:0016491
Cpe14g00560 632 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 52 632 IPR014006 GO:0016627|GO:0022900|GO:0050660
Cpe14g00560 632 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 290 393 IPR027477 -
Cpe14g00560 632 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 2 632 IPR030664 -
Cpe14g00560 632 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 86 95 IPR003952 GO:0016491
Cpe14g00560 632 Pfam Fumarate reductase flavoprotein C-term 501 632 IPR015939 GO:0016491
Cpe14g00560 632 Pfam FAD binding domain 52 448 IPR003953 -
Cpe14g00560 632 Gene3D succinate dehydrogenase protein domain 583 632 - -
Cpe14g00560 632 SUPERFAMILY FAD/NAD(P)-binding domain 42 471 IPR036188 -
Cpe14g00560 632 Gene3D - 472 582 - -
Cpe14g00560 632 Gene3D - 52 459 IPR036188 -
Cpe14g00560 632 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 2 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00560 K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] - csv:101211616 1191.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00904 Cpe-Chr13:7721948 Cpe14g00560 Cpe-Chr14:3552498 8.78E-69 dispersed
Cpe01g00710 Cpe-Chr1:4131275 Cpe14g00560 Cpe-Chr14:3552498 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00560 Cpe_Chr14 FPKM 10.086655 10.535608 11.589485 12.998742 11.450702 14.451732 13.935351 23.192627 21.499899 22.286503