Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00580 ATGGGGCGAATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTCTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAAAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGACATTGCACTTCAACTCGCCAATCCTACATCAAGCAATTCCAATGTCGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTTCAACTTGCTGAACAGCAGCTTAGGCTATTCGAACCGGATCCTTTTTCGTTTACGTCGAATGGAGAAATAGAGTCATGTGAGAAGAATCTGCTCGACACCTTGGCACGGATCGCTCAGAGGAAGAAAGATGTATTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCGTCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAACGGGCAGAACCAGAATCAAATTTGTGTGGCAGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAGGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAACGCAAGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAATGACGATGGATACTCGCCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCATTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA 1047 45.08 MGRIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVGGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3685015 3686942 + Cp4.1LG14g01420.1 Cpe14g00580 480964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00580 348 CDD MADS_MEF2_like 4 71 IPR033896 GO:0000977|GO:0045944
Cpe14g00580 348 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 3 314 - -
Cpe14g00580 348 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Cpe14g00580 348 ProSiteProfiles MADS-box domain profile. 1 57 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 53 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 314 - -
Cpe14g00580 348 MobiDBLite consensus disorder prediction 319 348 - -
Cpe14g00580 348 PRINTS MADS domain signature 19 34 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 PRINTS MADS domain signature 34 55 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 Coils Coil 111 131 - -
Cpe14g00580 348 Gene3D - 9 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00580 Cpe-Chr14:3685015 Cpe02g01021 Cpe-Chr2:9380290 8.72E-24 dispersed
Cpe14g00580 Cpe-Chr14:3685015 Cpe09g00188 Cpe-Chr9:1085213 1.24E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50528 PF00319 SRF-TF 4.10E-24 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00580 - - csv:101222576 543.502