Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00580 ATGGGGCGAATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTCTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAAAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGACATTGCACTTCAACTCGCCAATCCTACATCAAGCAATTCCAATGTCGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTTCAACTTGCTGAACAGCAGCTTAGGCTATTCGAACCGGATCCTTTTTCGTTTACGTCGAATGGAGAAATAGAGTCATGTGAGAAGAATCTGCTCGACACCTTGGCACGGATCGCTCAGAGGAAGAAAGATGTATTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCGTCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCGGAAAACGGGCAGAACCAGAATCAAATTTGTGTGGCAGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAGGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAACGCAAGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAATGACGATGGATACTCGCCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCATTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA 1047 45.08 MGRIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVGGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 3685015 3686942 + Cp4.1LG14g01420.1 Cpe14g00580 480964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00580 348 CDD MADS_MEF2_like 4 71 IPR033896 GO:0000977|GO:0045944
Cpe14g00580 348 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 3 314 - -
Cpe14g00580 348 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Cpe14g00580 348 ProSiteProfiles MADS-box domain profile. 1 57 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 SMART madsneu2 1 56 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 6 53 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 314 - -
Cpe14g00580 348 MobiDBLite consensus disorder prediction 319 348 - -
Cpe14g00580 348 PRINTS MADS domain signature 19 34 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 PRINTS MADS domain signature 34 55 IPR002100 GO:0003677|GO:0046983
Cpe14g00580 348 Coils Coil 111 131 - -
Cpe14g00580 348 Gene3D - 9 86 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00580 - - - csv:101222576 543.502
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00580 Cpe-Chr14:3685015 Cpe02g01021 Cpe-Chr2:9380290 8.72E-24 dispersed
Cpe14g00580 Cpe-Chr14:3685015 Cpe09g00188 Cpe-Chr9:1085213 1.24E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
Cpe01g00383 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 4.7e-49 192.2
Cpe01g01774 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 7.5e-53 204.9
Cpe04g00209 . 1 154 Type I MADS-box Gene Family AT5G48670 60.4 3.6e-47 186.0
Cpe09g00664 . 1 176 Type I MADS-box Gene Family AT5G48670 52.1 3.1e-46 183.0
Cpe20g00649 . 1 163 Type I MADS-box Gene Family AT5G48670 55.2 1.7e-44 177.2
Cpe01g00383 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.3e-37 154.1
Cpe14g00580 . 1 207 Type I MADS-box Gene Family AT1G77950 52.7 7.3e-51 198.0
Cpe14g00580 . 1 224 Type I MADS-box Gene Family AT1G77980 54.4 1.6e-58 223.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50528 PF00319 SRF-TF 4.10E-24 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00580 Cpe_Chr14 FPKM 430.796753 454.110535 547.833313 521.233704 131.942581 150.901566 122.177162 730.284668 770.289307 707.59021