Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00643 ATGGCGCCGCCGCCGCAAACGCCGCCGCCCACTAACTGGCTCTCTTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCTACTGACTCTCCGTTTCTTCCTTATGAGCCACCCTCCACTCCCTCTCCGCACTATCTTTTGGACAGTTTTTACTCCAATAATGGATGGAGTGGCAGTGCTAATTCTCATCATAATCATGAACCTAAGCTTGAGGATTTCCTCGGTGATTCCTCGCCGATGATGCGATATTCCGACAGTCAAACAGAGACACAAGATTCGTCTTTGACTCATATTTACGACCATGCTTATTTTGGGGACCAACAGGATTTTAAAACCATTGCGGCGTTTCAAGCTTTTTCTGGTAACTCTGGCTCTGAAGTTGATGACTCTGTTTCCATTACCAGAACCCAGATCGCCGCTGCTGAGATCCCCACTGGTGCTCTGTCTCTTGCTGTCGTGCAGAGCTCCGACACGGCGTCGGCTGTTGTCGCTGTCGATTCTGATTCCTCCAAGAAAATCGCTGATACGTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGACATAGATGGACGGGGAGATATGAAGCGCATCTATGGGACAATAGCTGTAGAAGAGAGGGTCAAGCTAGGAAAGGACGACAAGGTTGGTTTGTGTTCTTTCAAAAAGATGTTTCGAATTACGCTAAAGAATTGGACGAGATGAAACATGTCACGAAGCAAGAGTTTATCGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGAGGGGTGCGTCGATTTATAGAGGTGTAACTAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGCCGTGTTGCTGGGAACAAGGACCTGTATCTCGGGACGTTTGCTACGGAAGAGGAAGCAGCTGAGGCTTACGACATAGCAGCAATCAAGTTCAGGGGTTTGAACGCCGTGACGAACTTCGAGATGAGTCGTTACGACGTGGAAGCTATTGCGAAGAGTGCGTTGCCGATCGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCTTGGAAGCCGAGGAGAAACCGATTTTGAATCATGATCAAGCAATCCAGTGCGGCAATGGAAACAACAATATGAACTTAGGCACTGCCATCCAAGCTGTGCCTGTACCGTCGATCCCGTGCGGAATTCCATACGATACCGCAGCTATGCTGTATCACCATAATTACTATCATCTTCAGCCTAACGCGATCGGTTCCTCGGAGTCGACCAGCCCAGCCATTGCAGCTCCGGTGAATTTGGGACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1317 49.43 MAPPPQTPPPTNWLSFSLSPIEMLRSTDSPFLPYEPPSTPSPHYLLDSFYSNNGWSGSANSHHNHEPKLEDFLGDSSPMMRYSDSQTETQDSSLTHIYDHAYFGDQQDFKTIAAFQAFSGNSGSEVDDSVSITRTQIAAAEIPTGALSLAVVQSSDTASAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGWFVFFQKDVSNYAKELDEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLEAEEKPILNHDQAIQCGNGNNNMNLGTAIQAVPVPSIPCGIPYDTAAMLYHHNYYHLQPNAIGSSESTSPAIAAPVNLGPQAAEFFVWPHQSY 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4162762 4166273 + Cp4.1LG14g00750.1 Cpe14g00643 481027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00643 438 PRINTS Ethylene responsive element binding protein signature 300 320 IPR001471 GO:0003700|GO:0006355
Cpe14g00643 438 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700|GO:0006355
Cpe14g00643 438 ProSiteProfiles AP2/ERF domain profile. 260 318 IPR001471 GO:0003700|GO:0006355
Cpe14g00643 438 Gene3D AP2/ERF domain 260 320 IPR036955 GO:0003700|GO:0006355
Cpe14g00643 438 Gene3D AP2/ERF domain 182 228 IPR036955 GO:0003700|GO:0006355
Cpe14g00643 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 225 416 - -
Cpe14g00643 438 SUPERFAMILY DNA-binding domain 259 320 IPR016177 GO:0003677
Cpe14g00643 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 217 - -
Cpe14g00643 438 Pfam AP2 domain 260 310 IPR001471 GO:0003700|GO:0006355
Cpe14g00643 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 225 416 - -
Cpe14g00643 438 SMART rav1_2 260 324 IPR001471 GO:0003700|GO:0006355
Cpe14g00643 438 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 50 217 - -
Cpe14g00643 438 CDD AP2 259 320 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00784 Cpe-Chr1:4588880 Cpe14g00643 Cpe-Chr14:4162762 2.67E-106 dispersed
Cpe01g00785 Cpe-Chr1:4591876 Cpe14g00643 Cpe-Chr14:4162762 4.74E-114 dispersed
Cpe14g00643 Cpe-Chr14:4162762 Cpe16g00890 Cpe-Chr16:8370460 5.56E-96 dispersed
Cpe14g00643 Cpe-Chr14:4162762 Cpe02g01743 Cpe-Chr2:14248478 2.00E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50533 PF00847 AP2 1.60E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00643 K09285 - csv:101217714 644.039