Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00686 ATGATGAACCGCATGTCCGCCGTCGCCAACATTACGCCAAGGCAGTTTCTAGCTCATCTTGGCAACAACCACATGCCTATCGTCAAGCCCTGCGACGTCTTCATAAACCACAGAGGCGTCGACACCAAAAAGACAGTGGCGGCGTTGCTGTACGACAGGCTCGTCCGAATGAACCTCCGCCCCTTTCTAGACTACAAGAATTTGAAGCCTGGGGAGAAGCTGTTCGATGAAATTCATGGCGCCATTAGGCACTGCAAAGTTGGCGTGGCTGTGTTCTCGCCTCGCTATTGTGAGTCTTACTTTTGCCTACATGAGTTGGCCATGATCATCGACTCCAACAAGAAGCTCATTCCCATCTTCTGTGATATCAAACCATCTGAGCTTCGTATTCAGGGTGACAATGATTATGAAACAGATGAGCTTAGCCGGTTCAATTGGGCTCTCCAACAAGCTAAGCAGTTTGAGGGCCTCAAATTTAATTCCTTTAAAGAGTAA 495 48.28 MMNRMSAVANITPRQFLAHLGNNHMPIVKPCDVFINHRGVDTKKTVAALLYDRLVRMNLRPFLDYKNLKPGEKLFDEIHGAIRHCKVGVAVFSPRYCESYFCLHELAMIIDSNKKLIPIFCDIKPSELRIQGDNDYETDELSRFNWALQQAKQFEGLKFNSFKE 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4508505 4508999 + Cp4.1LG14g00280.1 Cpe14g00686 481070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00686 164 PANTHER COP1-INTERACTING PROTEIN-RELATED 29 163 - -
Cpe14g00686 164 Pfam TIR domain 32 136 IPR000157 GO:0007165
Cpe14g00686 164 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 29 163 - -
Cpe14g00686 164 ProSiteProfiles TIR domain profile. 29 152 IPR000157 GO:0007165
Cpe14g00686 164 SMART till_3 30 158 IPR000157 GO:0007165
Cpe14g00686 164 Gene3D - 28 164 IPR035897 -
Cpe14g00686 164 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 130 IPR035897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00686 - - - bhj:120090602 281.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00835 Cpe-Chr10:4730564 Cpe14g00686 Cpe-Chr14:4508505 7.19E-48 dispersed
Cpe14g00686 Cpe-Chr14:4508505 Cpe20g00421 Cpe-Chr20:2406482 2.66E-60 dispersed
Cpe14g00686 Cpe-Chr14:4508505 Cpe09g00855 Cpe-Chr9:7862330 7.34E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g266 . . . . . . . . Cmo16g00850 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0126 Cone9ag0151 . . . Csa03g00615 . . . . . . . Bpe01g00410 . . . . . Cma04g00910 . Car04g00855 . Cpe14g00686 . . . . . . . . . . . . . . . Lsi05g00707 . Chy06g01710 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002140 0 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 5 3 2 2 2 2 2 2 2 2 3 2 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00686 Cpe_Chr14 FPKM 0.0 0.0 0.136135 0.0 0.0 0.0 0.0 0.0 0.0 0.0