Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00687 ATGGCAGACCCAGACATTGAATCCCACACAAACCCCACCATTACAAACACCACTGATTCTTCCGAAGCCGCTGCCTTTTTCCGCGAGGAGAACCGCCCACTCACTTTAAAGTTCCACAAGGTCGTTTACAATATCAAATCTAAGAAGTCAAATTCGGAAGAGAAAGCGATCTTGAAAGGTATAAGCGGAGTGGTTCGACCAGGGGAGATGTTAGCCATGATGGGTCCATCGGGGTCCGGAAAAACCACGCTTCTCACAGCCATTGGAGGCCGCTTGGGTGGCCGTCTCGAAGGAACCATTTCTTATAACAATAAACCTTTCTCCAATAAAATTAAACGCAACATTGGCTTTGTAACCCAAGATGACATTCTTCTTCCCCATTTGACCGTCACTGAAACCCTTGTTTTCACTGCGCTTTTAAGGCTTCCAAATGCCTTGACCAAGCACCAGAAATTGGCTCACGCAGAGGCTGTCCTGTCCCAGCTTGGTCTCGTTAAGTGCAAGAACAGCGTCGTGGGTGACCAAAGACTAAGAGGGGTTTCTGGGGGAGAGAGGAAAAGGGTCAGCATTGGCCAAGAAATGCTCATAAACCCTAGTCTTCTGTTTCTTGACGAACCCACTTCGGGTCTTGACTCCACCACGGCTCAAAGGATCGTTTCCACTCTCTGGGAGCTCACTCATAATGGTGGGAAGACTGTGGTTATGACCATTCATCAGCCTTCCAGCCGCCTTTTCTATATGTTTCATAAGATCTTGTTGTTGTCCGAAGGCAACACGATGTATTTTGGGAAAGGATCCGAAGCCATGGATTATTTCTCCACTCTTGGCTACTCTGTTTCTGTGCCTATGAACCCTTCTGATTTCTTGTTGGATCTTGCTAATGAGTTAGCTGCAGGTTTGTCAATGAATGATCCGGAAGAGGAGGCCACCATGATTAAGGAGAAGCTTGTTTCATGTTACAAGAACAGTGACATGGCTGAAAACTTGGAGTTAGAGGTAAAAGAAAGTGATGAACATTTGGATGAAGATGCCACAATAAACAAGAGATTTGAGCGATGGTCTACCACTTGGTGGCAACAATTCTGTGTTCTCTTGAACAGAGGAATTAAGGAAAGAAAGCATGAATCCTTTTCTGGGCTCAAGATTGCCCAAGTTTTAGCTGTGGCTTTCATCAGTGGGCTGTTATGGTGGCAATCTGATGATGCCCATTTACAAGACAAGATTGGATTGTTCTACTTCTCCTCAAGCTTCTGGGGTTTCTTCCCTCTTTTGCAAGCTATCAGCACCTTTCCAAGAGAAAGAATGATACTCGAAAAGGAGAGATCTTCAGGAATGTACCGCCTCTCGTCTTACTTCATTTCAAGAACTATAAGCGACCTTCCAATGGAGCTCATCCTTCCCACCGTCTTCATTGTCATAGTCTACGGGATGGCGGGGTTGAAACGAACCGCGACGAATTTCTTTTCGACTCTATTTTGTCAGCTCCTGAGTGTTTTAGTGTCCCAAGGATTTGGTCTGGCGGTTGGCGCGCTTGTTTTGGACCAAACTTCAGCTACCACACTTGGATCAGTTATCATGCTTTGTTTCCTTCTAACATCGGGCTATTTTGTTCAGCATGTGCCGAGGTTTATTGCTTGGACTAAGTACATTTCTATTGGTACTTATACTTATAAGCTCTTGCTCATGTCTCAATACAAAGCTACTGATACTTATCTATGTCCCGGCCATGGAGTGGGGGTGTGTGAAGTTGGAGAGTTCCCTGCAATTAAGCAAATGGGTCTTCATGGGAAAATCACTGCTATTTTGGCTTTGATGGCTATGCTCGTTGGATATCGTCTTGTTGCTTATATTGCTTTGATGAGGATTGGTGTAATTAAGAAGGAATAG 1887 44.99 MADPDIESHTNPTITNTTDSSEAAAFFREENRPLTLKFHKVVYNIKSKKSNSEEKAILKGISGVVRPGEMLAMMGPSGSGKTTLLTAIGGRLGGRLEGTISYNNKPFSNKIKRNIGFVTQDDILLPHLTVTETLVFTALLRLPNALTKHQKLAHAEAVLSQLGLVKCKNSVVGDQRLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELTHNGGKTVVMTIHQPSSRLFYMFHKILLLSEGNTMYFGKGSEAMDYFSTLGYSVSVPMNPSDFLLDLANELAAGLSMNDPEEEATMIKEKLVSCYKNSDMAENLELEVKESDEHLDEDATINKRFERWSTTWWQQFCVLLNRGIKERKHESFSGLKIAQVLAVAFISGLLWWQSDDAHLQDKIGLFYFSSSFWGFFPLLQAISTFPRERMILEKERSSGMYRLSSYFISRTISDLPMELILPTVFIVIVYGMAGLKRTATNFFSTLFCQLLSVLVSQGFGLAVGALVLDQTSATTLGSVIMLCFLLTSGYFVQHVPRFIAWTKYISIGTYTYKLLLMSQYKATDTYLCPGHGVGVCEVGEFPAIKQMGLHGKITAILALMAMLVGYRLVAYIALMRIGVIKKE 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4512022 4514367 + Cp4.1LG14g00300.1 Cpe14g00687 481071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00687 628 Gene3D - 36 275 IPR027417 -
Cpe14g00687 628 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 36 281 IPR003439 GO:0005524
Cpe14g00687 628 SMART AAA_5 67 258 IPR003593 -
Cpe14g00687 628 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 12 623 - -
Cpe14g00687 628 Pfam ABC-2 type transporter 238 294 IPR043926 GO:0140359
Cpe14g00687 628 Pfam ABC transporter 58 208 IPR003439 GO:0005524
Cpe14g00687 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 277 IPR027417 -
Cpe14g00687 628 CDD ABCG_EPDR 33 263 - -
Cpe14g00687 628 Pfam ABC-2 type transporter 359 564 IPR013525 GO:0016020|GO:0140359
Cpe14g00687 628 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 623 - -
Cpe14g00687 628 ProSitePatterns ABC transporters family signature. 180 194 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00687 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213406 936.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00545 Cpe-Chr1:3141466 Cpe14g00687 Cpe-Chr14:4512022 5.95E-168 dispersed
Cpe09g00340 Cpe-Chr9:2055648 Cpe14g00687 Cpe-Chr14:4512022 6.15E-93 dispersed
Cpe14g00425 Cpe-Chr14:2654343 Cpe14g00687 Cpe-Chr14:4512022 0 dispersed
Cpe14g00687 Cpe-Chr14:4512022 Cpe14g00776 Cpe-Chr14:6113840 5.23E-157 dispersed
Cpe16g00857 Cpe-Chr16:8154997 Cpe14g00687 Cpe-Chr14:4512022 1.08E-75 dispersed
Cpe14g00687 Cpe-Chr14:4512022 Cpe14g00688 Cpe-Chr14:4517189 1.35E-22 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00687 Cpe_Chr14 FPKM 71.303368 73.60643 86.840553 87.435135 51.978859 52.855103 50.052963 109.656487 111.115013 103.428787