Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00711 ATGGAAGAAGAAGGATCAGAAAGAGGAAGGGGAAGTCCAACAACGTACTGTGTCACTGGTGCCACAGGCTTCATCGGCTCTTCCTTGGTTAACCTTCTTCTTCAAAATGGGTATAACGTCCATGCCACTCTTCGACACCCAGAGGAATATGTTCAAACAAATGTGATCAACCCGGAAATTAAGGGGACCATCAACGTGCTTAAGTCATGCATGAAATCTAGATCAGTGAAGCGAGTCGTTCTCACGTCGACGATTAGTACTCTTACTGGTAAAGATGCAAATGGAAAACGAAAGCGTTTTGTTGATGAATCATGCCAAACTTTTGTAGATCAAGTTTGGAAGAACAAACCAAGTGGCTGGGTGTATGCACTTTCAAAGCGTCTAAGTGAGGACGCAGCATTCAAATTTGCATATGAAAATGGTATTGATATCGTTTCAGTAATTACAAGCACAGTTTCTGGTCCATTCCTCACTTCCAATGTCCCATCAAGCGTTCAAGTTCTCATGGCACCAATAACAAGAGATCCCAACTTCCTTAGAATAGTATCAACGGTGAACGAAAGAATAGGATCAGTTGCAGTGGTTCACACCAAGGATATATGTAGAGCTCACATCTTCCTAATGGAGCACACGAAGGGCAAAGGTCGATATCTATGCTGTGTCGGAAGCTATACATTGTCAGAGTTGACGGAACGACTATCACAACATTGTGATGTGAAGTTGGAAAGATGTGTTGATGAGAAGCAAAATTGGATGCGTTCTGAGGTTGGAAACAAGAAATTGAAAGATTTGGGGTTCGAGTTTGAGCATGGAATAGATGATATAATAAAGGACACAGTTAGTTCGTGTGTTCAATGTGGCTTTATATCTCTTACTTAG 879 41.64 MEEEGSERGRGSPTTYCVTGATGFIGSSLVNLLLQNGYNVHATLRHPEEYVQTNVINPEIKGTINVLKSCMKSRSVKRVVLTSTISTLTGKDANGKRKRFVDESCQTFVDQVWKNKPSGWVYALSKRLSEDAAFKFAYENGIDIVSVITSTVSGPFLTSNVPSSVQVLMAPITRDPNFLRIVSTVNERIGSVAVVHTKDICRAHIFLMEHTKGKGRYLCCVGSYTLSELTERLSQHCDVKLERCVDEKQNWMRSEVGNKKLKDLGFEFEHGIDDIIKDTVSSCVQCGFISLT 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4692992 4695651 - Cp4.1LG14g00070.1 Cpe14g00711 481095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00711 292 Gene3D - 8 51 - -
Cpe14g00711 292 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 13 47 - -
Cpe14g00711 292 Gene3D - 52 290 - -
Cpe14g00711 292 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 13 47 - -
Cpe14g00711 292 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 49 280 - -
Cpe14g00711 292 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 286 IPR036291 -
Cpe14g00711 292 Pfam GDP-mannose 4,6 dehydratase 18 51 IPR016040 -
Cpe14g00711 292 Pfam NAD dependent epimerase/dehydratase family 54 213 IPR001509 -
Cpe14g00711 292 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 49 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00711 - - - csv:101211200 405.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00793 Cpe14g00711 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00711 Cpe-Chr14:4692992 Cpe12g00030 Cpe-Chr12:148577 2.36E-41 dispersed
Cpe14g00711 Cpe-Chr14:4692992 Cpe02g01619 Cpe-Chr2:13561534 9.61E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g408 . . . . . . Bma10g00532 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1117 Cone15ag1133 . . . . . . Bda05g00741 . . Bpe03g00807 . . . . . . . . . Cpe14g00711 Cpe01g00793 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010894 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00711 Cpe_Chr14 FPKM 3.218547 2.687691 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0