Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00712 ATGGCAGCCATGGTCTCGCTTCAGAGCTCCATGACCGCTCTTTCGCTCTCTTCCAGTTCCTTTCTTGGCCACCGCCTTCAGCCGTCCACAATTTTCGCTGCGCCCGTAACATCGAAAGAGAAGCCATGTCTCATAGTAATGAAGCTCAAAAGATGGGAACGGAAGGAATGTAAGCCAAACAGCCTTCCTGTATTACACAAAATGCATGTCAAGGTTGGAGACACAGTGAAAGTTATAGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACACAAATTTTCAAACATAATAGCAAGGTGACAGTGAAAGAAATAAATTTGAAGACAAAGCATGTAAAGAGCAGAGAGGAGGAAGAACAAGGACAGATTATTAAGGTCGAAGCACCCATCCACAGCTCCAATGTGATGCTTTACTCGAAAGAAAAGGATGTAGCAAGCCGGGTCGGTCACAAGACCCTTGAAAATGGAAAACGAGTACGATATCTCATAAAAACTGGGGAAATAATTGACAGCACTGACAATTGGAAGAAGCTCAAGGAGGAGAAGAGCAAAACTGAAGTGGCTACTACTGCTTAA 576 43.92 MAAMVSLQSSMTALSLSSSSFLGHRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITQIFKHNSKVTVKEINLKTKHVKSREEEEQGQIIKVEAPIHSSNVMLYSKEKDVASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKEEKSKTEVATTA 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4717569 4720356 - Cp4.1LG14g00040.1 Cpe14g00712 481096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00712 191 Pfam KOW motif 72 103 IPR005824 -
Cpe14g00712 191 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 105 169 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cpe14g00712 191 CDD KOW_RPL26 73 137 IPR041988 GO:0003723
Cpe14g00712 191 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 4 189 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cpe14g00712 191 ProSitePatterns Ribosomal protein L24 signature. 73 90 IPR005825 GO:0003735|GO:0005840|GO:0006412
Cpe14g00712 191 SUPERFAMILY Translation proteins SH3-like domain 66 168 IPR008991 -
Cpe14g00712 191 TIGRFAM rplX_bact: ribosomal protein uL24 67 169 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cpe14g00712 191 Hamap 50S ribosomal protein L24 [rplX]. 68 164 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cpe14g00712 191 Gene3D - 63 168 IPR014722 -
Cpe14g00712 191 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 4 189 - -
Cpe14g00712 191 SMART kow_9 69 96 IPR005824 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00712 K02895 RP-L24, MRPL24, rplX; large subunit ribosomal protein L24 - csv:101209475 323.553
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00026 Cpe-Chr5:102534 Cpe14g00712 Cpe-Chr14:4717569 7.34E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g407 . . . . Bpe09g00201 . . Bma13g01020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00800 . Bda12g00881 . . . . . . . . . . . Cpe14g00712 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012446 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 0 1 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00712 Cpe_Chr14 FPKM 1.092445 0.702516 0.509389 0.392256 0.647118 0.458962 0.377206 0.220376 0.561685 0.628628