Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00716 ATGGTATGGGATAGACTTATGATTGATATACTCCTCAAATACATGAAACCTTTATATATAGCAATATTAAATCTTTATAAAGAAATTAACAATGAAATAGGAATGGATGAAACTGAATTCTACTTTGAAGAAGCTAAATGGTTAAACAAAAATTACAAACCAAAATTTAAAGAGTACATGGAATGGGGATTACATAGCTCGGCTTATTTCTTGGTTATAAGCATTTCACTCATTGGTATAGGTGACATAGTAACAAATGAGGTGATTGAATGGTTTTCTAGAAGACCTAAAGTTATTAAAGCCGCAACAATAATTGACAGACTCATGGATGACCTCGTTTCCCACAAGGTATATATCGTTTACTATCCTTGGAAAGCAGCACACACAAATTTGAGCAACAAAGGGAACATGTTGCTTCAGCGGTTGAATGTTACATGGAACAATATAGTTGTTCAAAGGAAGAAGCTTGCGTTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACATAA 513 33.92 MVWDRLMIDILLKYMKPLYIAILNLYKEINNEIGMDETEFYFEEAKWLNKNYKPKFKEYMEWGLHSSAYFLVISISLIGIGDIVTNEVIEWFSRRPKVIKAATIIDRLMDDLVSHKVYIVYYPWKAAHTNLSNKGNMLLQRLNVTWNNIVVQRKKLALNFISKWLMHGRT 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4784342 4785053 + Cp4.1LG14g00020.1 Cpe14g00716 481100

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00716 170 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 3 117 - -
Cpe14g00716 170 PANTHER OS04G0344100 PROTEIN-RELATED 3 117 - -
Cpe14g00716 170 Pfam Terpene synthase family, metal binding domain 3 116 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cpe14g00716 170 Gene3D Farnesyl Diphosphate Synthase 1 137 IPR008949 -
Cpe14g00716 170 SUPERFAMILY Terpenoid synthases 3 116 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00716 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101211452 144.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00714 Cpe-Chr14:4728483 Cpe14g00716 Cpe-Chr14:4784342 2.81E-48 proximal
Cpe14g00716 Cpe-Chr14:4784342 Cpe14g00717 Cpe-Chr14:4815002 2.61E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g402 Blo03g00603 . . . . . . Bma13g00961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g02683 . . . . . . . . . . . . Cma16g00829 . . Cpe14g00716 . . . . . . . . . . . . . . . Lsi05g00658 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00716 Cpe_Chr14 FPKM 18.357914 18.286598 21.906391 21.232607 22.256884 17.690857 20.547539 33.396812 36.37114 35.785076