Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00717 ATGGTGATGGAGGAACAAGCTAAACAATTGAAAGGAGAAGTGAAAAAAATGCTAATGATTTCTAATGGAAATCCCCTTAAAATGTTAATGACTCCACTTCACACTGTCTCTCTTCTATTTGGACTGCTTAGACAACAAGGTTATAAAATTCTATGCGAAAGTAATGAAAAATTCAAAGAATCACTGGGAAATGTTCCTAGTGCAAGAGGAATATTAAGCCTATATGAGGAAGCTCTTGATTTTAGTGTCAAACATCTAAGAGATGTTATAACCAACTCAAACACCAAATTTGCTGCTCAAGTTAGCAGTGCCTTGAAATGGCCACTAAGAAAAGCCCTTCCAAGATTAAAGGCGAGAGAGTACATATCAATGTATCAAGAAGATCCTTCCCATTCTGAAACTTTGCTTGCCTTTTCAAAATTGGATTTCAACATATTACAGAAACTTCATCAAAAGGAGTTGAAGGAACTCACCCGATGGGATAGAAGCCTGAGCCCAAACAATCTTAAAGCCAAACGTCCTATTGCAAACTTTCATCCAAGCATATGGAAGGACCATTTCCTTTCACTATCATCCGAAGCAACGAAAATAGATGTTGAGGTGGAGGAACAAGCTAAACAGTTGAAAGGAGAAGTGAAAAAGATGCTAATAATTTCTAATAGAAATCCTTTTAAGATACTGAATCTAGTTGATTCAATTCAACGGTTAAATGTATCTTATCATTTTGAGAACGAGATTGATCAAATCTTAGAACAAATATATGCAAACTATAGAGAGTTCACAAATATTGATGGCAATGATGATCTTTACACGATCTCTCTTCTATTTCGACTCCTTAGACAACAAGGTTATAAAATTCCTTGCGAAAGTAATGGGAAATTCAAAGAATCACTAGCCGAAAATGCAAGAGCAATCTTAAGTCTATATGAAGCAGCACATATGAGGGTACATGGAGAAGATGTTCTTGAGGAAGCTCTCGATTTTAGTGTCAAACATCTAAAAAATATTATATCCAACTCGAGCCCAATTTTTGTCGCTGAAGTTACGAGCGCCTTGAAATATCCTCTAAGAAAAGCCATTCCAAGAATGAAGGCAAGAGAGTACATACCAATATATGAAGAAGATCCTTCACATTCTAAAACTTTGCTTACTTTCTCAAAATTGGATTTCAACATATTACAGAAACTTCATCAAAAGGAGTTGATAGAAGTCATCAGGTGGTGGAAGGATTTAAAAGTCGAAACCAATTTTTCTTTTGCAAGAGACAGAATTGTTGAGTGCTACTTATGGACGTTGGGGGTATATTTTGAGCCTCAATTCAGTGTTGGTAGAAAACTGTTAACCAAAGTAACCGCCATTTCTTCAATTTTAGATGATATATATGATGCATATGGAACATTTGAAGAACTCCAAGTCCTCACTCCAGCTATTCAAAGTAAAGAGATAGACAAGGATGAAAGTTCACTCCACGTCCATATTGCGAAAGAAGAAATAAAGAAACTAGCGGAATCCTACTTTGAAGAAGCTAAATGGTTAAGCAAAAATTACAAACCAAATTTTAAGGAGCACATGGAATTGGCATTATATACAACAGGTTATTCTCTGCTTATAAGCATTTCACTTCTCGTCATGGGCAACATGGTAACGAATGATGTACTTCAATGGGTTTCTAGAAGACCTAAAATTATTGAAGGCTCAACAATCATTTGTAGACTCATGGACGACATCGTTTCCCACAAGTTTGAGCAAGAAAGGGAACATGTTGCTTCTGCGGTTGAATGTTACATAGAGCAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGATGTAAATGAAGCATGTCTTCATCCAATTGCTGTTCCAATGCCTATTTTAATGCGGACAGTAAATTTTTCAAGAGTTATGAACGTGATTTATTCGGATGAGGATGGATACACAAATTCAAATGGCAAAACAAAATTTATTATTGAATCTCTTCTTGTGAACTCCGTGCCTTGTTGA 2034 36.04 MVMEEQAKQLKGEVKKMLMISNGNPLKMLMTPLHTVSLLFGLLRQQGYKILCESNEKFKESLGNVPSARGILSLYEEALDFSVKHLRDVITNSNTKFAAQVSSALKWPLRKALPRLKAREYISMYQEDPSHSETLLAFSKLDFNILQKLHQKELKELTRWDRSLSPNNLKAKRPIANFHPSIWKDHFLSLSSEATKIDVEVEEQAKQLKGEVKKMLIISNRNPFKILNLVDSIQRLNVSYHFENEIDQILEQIYANYREFTNIDGNDDLYTISLLFRLLRQQGYKIPCESNGKFKESLAENARAILSLYEAAHMRVHGEDVLEEALDFSVKHLKNIISNSSPIFVAEVTSALKYPLRKAIPRMKAREYIPIYEEDPSHSKTLLTFSKLDFNILQKLHQKELIEVIRWWKDLKVETNFSFARDRIVECYLWTLGVYFEPQFSVGRKLLTKVTAISSILDDIYDAYGTFEELQVLTPAIQSKEIDKDESSLHVHIAKEEIKKLAESYFEEAKWLSKNYKPNFKEHMELALYTTGYSLLISISLLVMGNMVTNDVLQWVSRRPKIIEGSTIICRLMDDIVSHKFEQEREHVASAVECYIEQYGCSEEEACVELHKQVVDAWKDVNEACLHPIAVPMPILMRTVNFSRVMNVIYSDEDGYTNSNGKTKFIIESLLVNSVPC 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 4815002 4833483 + Cp4.1LG14g00010.1 Cpe14g00717 481101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00717 677 Gene3D - 7 129 IPR036965 GO:0010333|GO:0016829
Cpe14g00717 677 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 30 167 - -
Cpe14g00717 677 Gene3D Farnesyl Diphosphate Synthase 130 176 IPR008949 -
Cpe14g00717 677 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 3 131 IPR008930 -
Cpe14g00717 677 CDD Terpene_cyclase_plant_C1 173 673 IPR044814 GO:0010333|GO:0016102
Cpe14g00717 677 PANTHER OS04G0344100 PROTEIN-RELATED 30 167 - -
Cpe14g00717 677 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 493 656 - -
Cpe14g00717 677 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 171 485 - -
Cpe14g00717 677 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 179 378 IPR008930 -
Cpe14g00717 677 Gene3D Farnesyl Diphosphate Synthase 393 677 IPR008949 -
Cpe14g00717 677 Pfam Terpene synthase, N-terminal domain 182 352 IPR001906 GO:0010333|GO:0016829
Cpe14g00717 677 SUPERFAMILY Terpenoid synthases 378 676 IPR008949 -
Cpe14g00717 677 PANTHER OS04G0344100 PROTEIN-RELATED 493 656 - -
Cpe14g00717 677 PANTHER OS04G0344100 PROTEIN-RELATED 171 485 - -
Cpe14g00717 677 SUPERFAMILY Terpenoid synthases 131 167 IPR008949 -
Cpe14g00717 677 Gene3D - 183 392 IPR036965 GO:0010333|GO:0016829
Cpe14g00717 677 Pfam Terpene synthase family, metal binding domain 480 620 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cpe14g00717 677 Pfam Terpene synthase family, metal binding domain 136 170 IPR005630 GO:0000287|GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00717 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 csv:101211697 604.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00022 Cpe-Chr5:86617 Cpe14g00717 Cpe-Chr14:4815002 4.07E-15 dispersed
Cpe08g00803 Cpe-Chr8:6400080 Cpe14g00717 Cpe-Chr14:4815002 1.05E-13 dispersed
Cpe09g00877 Cpe-Chr9:8035305 Cpe14g00717 Cpe-Chr14:4815002 2.66E-38 dispersed
Cpe14g00714 Cpe-Chr14:4728483 Cpe14g00717 Cpe-Chr14:4815002 2.35E-53 dispersed
Cpe14g00717 Cpe-Chr14:4815002 Cpe20g00395 Cpe-Chr20:2218181 1.86E-06 dispersed
Cpe16g00061 Cpe-Chr16:978092 Cpe14g00717 Cpe-Chr14:4815002 4.83E-15 dispersed
Cpe14g00715 Cpe-Chr14:4783494 Cpe14g00717 Cpe-Chr14:4815002 4.38E-19 proximal
Cpe14g00716 Cpe-Chr14:4784342 Cpe14g00717 Cpe-Chr14:4815002 2.61E-30 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00717 Cpe_Chr14 FPKM 2.530189 3.33529 5.824528 7.026303 7.158196 7.403629 6.22559 16.648043 18.442057 15.889731