Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00720 ATGGCCTCCACTACCACAGAATCTTCTCGTATTCTTCACGAAATCGAGACCTTGAAATCCGCCAGGTCCGACTTAGATCGTCGTATTTCATCTCTCGAGTCCCAGCTCCGCGACCTGAATCATCACCAGAACAATGGCGTCTCTCATGCCCCTTCCGCTTCATTATCCACTCTCGACTCCACTTTTCCTCATGGATTGTCCCCCGACATGATTTACAGATACAGTCGCCACCTCCTCCTTCCTACCTTCGGAGTCCAAGCGCAATCGCGGCTTTTGAAGTCTTCGATTTTAGTAGTTGGAGCGGGAGGGTTGGGCTCACCAGCTTTGATGTATCTTGCAGCTTGTGGGGTTGGTCGTCTGGGAATTGTTGATCATGATGTAGTTGAGCTAAATAACATGCATCGGCAGATCATCCATACTGAGGCATATATTGGACGGTCGAAAGTAGAATCGGCTGCTGCTACGTGTCACTCGATCAACTCTACTGTCCAGATTGTTGAACACAAAGAAGCTCTTCGTACATCAAACGCTTTAGAAATTTTTAGCAAATATGATATCATAGTAGATGCAACAGATAATGCTCCTAGCCGATACATGATTAGTGATTGTTGTGTGGTGCTGGGAAAGCCTCTTGTGTCTGGTGCAGCTGTAGGTTTGGAGGGACAGCTGACAGTTTACAATTACAATGGAGGTCCATGCTACCGATGCCTATTTCCAACTCCCCCGCCAACAACAGCATGCCAAAGGTGTTCTGATAGTGGTGTTCTTGGAGTAGTTCCTGGGATCATTGGCTGTCTTCAAGCCTTGGAGGCTATAAAAATTGCAAGTGCAGTTGGTGAGCCACTTTCTGGACGGATGCTTCTGTTTGATGCCTTAGCAGCAAGGATCCGAATTGTCAAGATTCGTGGAAGGTCGTTGCAGTGTGAAGTATGTGGAGAAAATTCTAAATTCAAAGCAGCACAATTTCAAGAATTCGACTATGAGAAGTTCACCCAGTCTCCATTATCTACGTCTCCTCTGAGGTTAAAACTACTGGAGCCACACTCAAGAATAAGTGCCAAAGAGTACAGTGATCGACTTCATAAAGGCGAATCACACGTGCTTTTGGATGTCCGTCCCGAGCACCATTTCAGAATTGTTTCTCTTCCGAACTCCCTTAACGTTCCGCTGTCTAGTTTGGACGGAAGGCTGGAAGAAGTTGGTTTGGCTCTGAAGGGAGAGAAACATAAACAGGGTTCAGACTCCTCCAGTGGTGATGTTCAATTATACGTTGTTTGTAGGAGAGGGAATGATTCTCAAAGAGCCGTCAAGGCTCTCCAGGAGAAAGGGTTCAGTTCAGCTAAGGATATCATTGGTGGATTGGAGGGTTGGGCCCGCGAGGTAGACCCCACTTTCCCTTCCTATTAA 1407 46.77 MASTTTESSRILHEIETLKSARSDLDRRISSLESQLRDLNHHQNNGVSHAPSASLSTLDSTFPHGLSPDMIYRYSRHLLLPTFGVQAQSRLLKSSILVVGAGGLGSPALMYLAACGVGRLGIVDHDVVELNNMHRQIIHTEAYIGRSKVESAAATCHSINSTVQIVEHKEALRTSNALEIFSKYDIIVDATDNAPSRYMISDCCVVLGKPLVSGAAVGLEGQLTVYNYNGGPCYRCLFPTPPPTTACQRCSDSGVLGVVPGIIGCLQALEAIKIASAVGEPLSGRMLLFDALAARIRIVKIRGRSLQCEVCGENSKFKAAQFQEFDYEKFTQSPLSTSPLRLKLLEPHSRISAKEYSDRLHKGESHVLLDVRPEHHFRIVSLPNSLNVPLSSLDGRLEEVGLALKGEKHKQGSDSSSGDVQLYVVCRRGNDSQRAVKALQEKGFSSAKDIIGGLEGWAREVDPTFPSY 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5035439 5039035 + Cp4.1LG14g07180.1 Cpe14g00720 481104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00720 468 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 5 454 IPR045886 -
Cpe14g00720 468 Pfam ThiF family 74 309 IPR000594 -
Cpe14g00720 468 PANTHER ADENYLYLTRANSFERASE AND SULFURTRANSFERASE MOCS3 5 454 - -
Cpe14g00720 468 Gene3D - 349 468 IPR036873 -
Cpe14g00720 468 Gene3D - 68 317 - -
Cpe14g00720 468 SMART rhod_4 352 463 IPR001763 -
Cpe14g00720 468 Hamap Adenylyltransferase and sulfurtransferase MOCS3 [MOCS3]. 32 468 IPR028885 GO:0002143|GO:0004792|GO:0005829
Cpe14g00720 468 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 65 435 IPR035985 GO:0008641
Cpe14g00720 468 Coils Coil 15 42 - -
Cpe14g00720 468 Pfam Rhodanese-like domain 352 459 IPR001763 -
Cpe14g00720 468 ProSiteProfiles Rhodanese domain profile. 362 466 IPR001763 -
Cpe14g00720 468 CDD ThiF_MoeB_HesA_family 73 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00720 K11996 MOCS3, UBA4; adenylyltransferase and sulfurtransferase [EC:2.7.7.80 2.8.1.11] - csv:101220467 784.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00078 Cpe-Chr8:502396 Cpe14g00720 Cpe-Chr14:5035439 1.62E-12 dispersed
Cpe14g00720 Cpe-Chr14:5035439 Cpe16g00263 Cpe-Chr16:4633855 8.44E-18 dispersed
Cpe14g00720 Cpe-Chr14:5035439 Cpe05g01278 Cpe-Chr5:8919056 3.21E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g557 . . . . Bpe09g00160 . . Bma13g01072 Cmo16g00940 . . . . . . . . . . . . . . . Cla10g00489 Cam10g0478 Cec10g0498 Cco10g0484 Clacu10g0497 Cmu10g1324 Cre10g0730 . . . Cone15ag1182 . . . Cme06g02850 . Blo10g00844 . Bda12g00925 . . . . . . . . Cma16g00905 . Car16g00880 Cpe14g00720 . . . . . . . . . . . . . . . Lsi05g00576 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g00306 . 59 348 Sulfurtransferasese/Rhodanese AT1G79230 66.4 2.5e-128 455.7
Cpe01g00460 . 59 334 Sulfurtransferasese/Rhodanese AT1G79230 64.4 1.6e-119 426.4
Cpe01g00460 . 59 299 Sulfurtransferasese/Rhodanese AT1G16460 72.6 4.3e-102 368.2
Cpe14g00306 . 59 295 Sulfurtransferasese/Rhodanese AT1G16460 64.9 2.7e-96 349.0
Cpe09g01146 . 103 407 Sulfurtransferasese/Rhodanese AT5G23060 52.1 3.3e-69 259.2
Cpe08g00585 CST 1 365 Sulfurtransferasese/Rhodanese AT4G01050 55.6 3.1e-101 366.3
Cpe01g00960 . 91 450 Sulfurtransferasese/Rhodanese AT2G40760 75.0 1.8e-156 549.7
Cpe04g00046 . 91 437 Sulfurtransferasese/Rhodanese AT1G17850 67.4 3.9e-148 521.9
Cpe10g01154 . 61 180 Sulfurtransferasese/Rhodanese AT2G42220 69.2 1.2e-44 177.2
Cpe03g00053 . 238 418 Sulfurtransferasese/Rhodanese AT3G08920 64.1 1.0e-66 250.4
Cpe18g00873 CCT 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.3 6.5e-112 401.0
Cpe05g00472 . 67 301 Sulfurtransferasese/Rhodanese AT5G19370 62.3 8.0e-81 297.7
Cpe14g00720 . 117 468 Sulfurtransferasese/Rhodanese AT5G55130 71.6 2.0e-147 519.2
Cpe14g00024 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 7.3e-79 290.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009966 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00720 Cpe_Chr14 FPKM 44.180809 42.964458 50.66301 47.419586 162.465317 140.464157 163.249176 21.101927 23.353642 25.60618