Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00722 ATGGCTGCTTCATCATCCCTTCTGACATACTCATTGCAAGAGCATGCGTCCACCGAAACAGCAATAAAACGCTGTAAGGGCTATATGTACGGTAACTTATGTTCATCCTACTCCCGGATTGGGTACTCCAAAACCAAGTTCCGTGAGAATTCATCAAAATGGGAACATATTCAGAAATCTCCAATGAGGAATGAAATCCTGTGCCGTGCTGTGGAAATTGAAAATTCACTTTCTCCCTTTGTAAGCAAGAAGTTTGAGCTTGATGATGTGATCGAATCTCAGCAATTTGATAGAGAGATTCTCAATGATATTTTCGATGTTGCACATGATATGGAAAAGATTGAAAAAAGTTCATCTAAAAGCCAAATGCTCAAGGGATATTTGATGGCTACCCTGTTCTATGAGCCCTCAACTAGAACTAGGCTTTCGTTTGAATCTGCCATGAAAAGGTTAGGTGGGGAGGTATTGACTACTGAAAATGCGCGGGAGTTTTCTTCAGCAGCCAAAGGAGAGACTCTCGAAGATACCATCAGAACTGTTGAGGGCTATTCAGATATAATTGTAATGCGGCATTTTGAAAGTGGTGCTGCTAAGAAAGCTGCCGCAACTGCTGGCATTCCTATTATTAATGCTGGTGATGGTCCTGGACAACATCCCACTCAGGCTCTTCTAGATGTATATACTATTCAGAGAGAGATAGGAAAACTGGATGGAATTAAAGTTGGGCTTGTGGGAGATCTTGCCAATGGTAGAACTGTACGGTCACTAGCATATTTGCTCGCCAAGTATCAAGACGTGAAGATATACTTCGTCTCTCCAGATGTTGTAAAAATGAAGGATGATATAAAAGAGTATTTGTCAGCACAAGGTGTGAAATGGGAAGAATGTGAGAACTTGATGGAAGTTGCGTCCGAGTGTGATGTGGTATATCAAACTCGTATTCAGCGGGAAAGATTTGGGGAGAGGATTGATCTGTATGAACAAGCTAGAGGCAAGTACATTGTGGATAAGAATGTGTTAAAAGTGATGCAGAGACATGCTGTGGTCATGCACCCCCTCCCTCGCCTCGATGAGATCACTGTTGATGTAGATGAGGATCCAAGGGCTGCCTACTTCCGACAAGCAAAGAATGGTCTCTATATTCGGATGGCGCTTGTGAAACTCTTGCTACTTGGATGGTGA 1182 42.64 MAASSSLLTYSLQEHASTETAIKRCKGYMYGNLCSSYSRIGYSKTKFRENSSKWEHIQKSPMRNEILCRAVEIENSLSPFVSKKFELDDVIESQQFDREILNDIFDVAHDMEKIEKSSSKSQMLKGYLMATLFYEPSTRTRLSFESAMKRLGGEVLTTENAREFSSAAKGETLEDTIRTVEGYSDIIVMRHFESGAAKKAAATAGIPIINAGDGPGQHPTQALLDVYTIQREIGKLDGIKVGLVGDLANGRTVRSLAYLLAKYQDVKIYFVSPDVVKMKDDIKEYLSAQGVKWEECENLMEVASECDVVYQTRIQRERFGERIDLYEQARGKYIVDKNVLKVMQRHAVVMHPLPRLDEITVDVDEDPRAAYFRQAKNGLYIRMALVKLLLLGW 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5053516 5057296 + Cp4.1LG14g07220.1 Cpe14g00722 481106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00722 393 Gene3D Aspartate/ornithine carbamoyltransferase 90 385 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 SUPERFAMILY Aspartate/ornithine carbamoyltransferase 87 390 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 Pfam Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 237 388 IPR006131 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 PANTHER ASPARTATE CARBAMOYLTRANSFERASE, CATALYTIC CHAIN 1 393 - -
Cpe14g00722 393 Gene3D Aspartate/ornithine carbamoyltransferase 218 377 IPR036901 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 1 393 - -
Cpe14g00722 393 Hamap Aspartate carbamoyltransferase [pyrB]. 87 392 IPR002082 GO:0004070|GO:0006207
Cpe14g00722 393 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 133 152 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 218 229 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 345 354 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 PRINTS Aspartate/ornithine carbamoyltransferase superfamily signature 355 378 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 PRINTS Aspartate carbamoyltransferase signature 123 145 - -
Cpe14g00722 393 PRINTS Aspartate carbamoyltransferase signature 163 172 - -
Cpe14g00722 393 PRINTS Aspartate carbamoyltransferase signature 217 234 - -
Cpe14g00722 393 PRINTS Aspartate carbamoyltransferase signature 309 318 - -
Cpe14g00722 393 PRINTS Aspartate carbamoyltransferase signature 349 354 - -
Cpe14g00722 393 PRINTS Aspartate carbamoyltransferase signature 371 385 - -
Cpe14g00722 393 ProSitePatterns Aspartate and ornithine carbamoyltransferases signature. 133 140 IPR006130 GO:0006520|GO:0016597|GO:0016743
Cpe14g00722 393 Pfam Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 90 230 IPR006132 GO:0006520|GO:0016743
Cpe14g00722 393 TIGRFAM asp_carb_tr: aspartate carbamoyltransferase 89 390 IPR002082 GO:0004070|GO:0006207
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00722 K00609 pyrB, PYR2; aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] - csv:101220705 712.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00117 Cpe-Chr2:585433 Cpe14g00722 Cpe-Chr14:5053516 2.02E-19 dispersed
Cpe14g00722 Cpe-Chr14:5053516 Cpe06g00103 Cpe-Chr6:505619 8.40E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g558 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00492 . . . . . . . . . . Sed01g2981 . . . . . . Cpe14g00722 . Bhi11g00591 Tan01g1733 Cmetu06g0270 . . . . . . . . . . . . . Chy06g01834 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006067 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 2 1 1 0 1 3 1 1 1 2 0 2 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00722 Cpe_Chr14 FPKM 65.356186 76.96756 45.960583 49.833878 60.578686 61.448994 59.481155 65.711868 71.268768 66.254616