Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00740 ATGGCCGAACCCATGGAGGAAACCACGGTTGTTGATGGCGAACCCACTCTACCCACCGGCGAGAAGAGGACAATTGAGATTCACGGGGACGATGAACTTGCGGAGCCTCAGTTGAGAAAGAAGCCCCGTAATGGTTGCGAGTTGGGTCCTAATCTCCGGAGGGTTGCGGAGATTGTGTTGGTCATGTCCACAATGACGGCGCTGCGTGCTGGAAAGAAGCCTACTGATGCCGAGGTTGAATTAATGGCTGAGGCTAGGGCTAAGTTGGTTCAGATTTGTGAAGGATTGGCTCCCAAGGATATTGTGGGAAGGGAAGGAATTAGCTCTTTGATTGAAGATTTGGGGCTGCATGGTAACATTAGGGATCAGAAGTTAGGGTTTCGCGGTCCCAGGTTGACGATAGCGGAGAAATTGGCGCAGACAAAGAAGAAGATGGAAGATTCCAAGAAATATATCCCACCTTCGGGTTATGGATCTCATCCAACCCAAAAACATATTATTTCATCGATTGAGAACCGTGGGACATTGCCTTCTGTACGGATGTTTCCCTCAGACAAATCAAGTCCTGTCCCTAATTCAGTGGGAGGCACTGCCGGTACTCTGCCTTCAGGTCATGTTTCTGTTGCTGGTTCTACGTCTATGCAGGTTCAACCACAACTAACAGGCAATGAAGTCAGAGCTCATAATATTTCAAGTGGATTTCCAATTAATCAACAAGGAAGGGACCCTTCCTCACTCTTGCATGGCATTGAAAGACCACTAAATGGGGCATATGGATCTCAAATGCAAGTTAACTCTTCCGTAAATCACTCTCTGGCGAGTGCTCCAACCTGGTCTGCTCAAACTCAATCTGCCTTGTCGGCTAAAGGTGGGCAAGAACACAAGTTTCCAAATCATTCTGCTGCTAATGCTCAGGGAACCACAGATTCAAGAGCCTTAAGATCGTCTTCTCAAGCAGCAAGGGACCAAAGCTTTAGACCTCCAATTCCTCAAACTGGGACAGGAAATATGGCTGGTTTGCAGCCGCATTTACAGAGCATAAATTTTGTGCAAGGGCCTTCAGTTTCTAATAGCCACAATGAAATTGTCAAAATTATTCAGAAGCTGTTACAGCCACAGCTTCCTGATCATCCTACTTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAGTTACCATCAATGAGATTGATAGTGTACTTATATGTGATGCTTGTGAGAAAGGATTTCACTTGAAATGTGTACAATCACCTAATCAGAGAGCGATTCCTAGGGGGGAGTGGCACTGCCCAAGATGCTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATACGGGCGTGTCATGAGGAGTAACCCCCCACCAAAATTATCTGTCAATACCAGTGGATCTCAGCCACCAGAGAAGAGTTTAGGAGCCGCTGTGGAACAAAAGGCCAGTGCTGGACAGCTGAAGTTAGTTTCTAATGGAGGTTTAGATTTGCTAAGTCACCACCAGCCTGCTGAGGATGGAAGCAATGCCAATGAATCATCTGGTATCAAAATTCCAAATGCGGAAGAAGCTCATGGAAATAATCTTTTACCAATTAGGAAAGACATAGATGAGAAACCAACCTCTTCGACTTCCCTGAATACCCCAGCCAAATCCTTGGGGATGGTTTGTGAACCCTCTTCTGCTGAGATATCAAGTGAAGTATCTGCTCAGCACATTAAAAGTTCTCAAGCACCAATAGGTGAAGATGAATCCTCAGCCAAAGCAGAGCCTCCTGAAGAATCTCAAACTGCGGGTGACAATTCTAGTAACCCTAAACCCCCTGACATTCCTCAAATTGTTGATCAGCAAATGGGTTCTAATGGTCCAGAGGAACCTTACTCAACAGCAAGTTCTCATGACACTTCAAATGTGAAGAAAGATGGCCATGAAGTTCTGCAGGGGAATAATGTTGAAAATTTTGAAGCTAGCATCATAAATAGAGAGCAGTCCGGGACTTCTTCCAATGACCTGCATGATGTTGAATGGATTGGCGACCCACATCAGCTGACAGATACGAGGGCATATTACAAATCCTGTCGTGTTGATGGGGTTACATATAAAGTTGAAGAATTTTCTCTTTTTCACTCCAACAACGGGAAATTGATGCCCTATAGGCTTCAGTCCTTGTACCATGAATATGAAAGTGGATTGAACTGGGCTATTCTTAAGCAGTGTTACTTTCATGAGGACTTGCCCAAGGAAGTTGCCCACCTCTGCCCGTGCTCCCCTGAACAAAATGAGGTATATACATCCGATGGCGACATTTGTTTAGCTGTGGGCTTAATTCGAAGCCCATGTGAAGTTCTTCCTGTTGCCAAGTATAAAGAAGAACATGAAAGGCGAAAACAATTGGGTCCTGGGGCAGATGATGGAATAAAGCCAACTTTCCTGTGCAAATGGTTTTATACTGAAGCTAACAAAGAATTTGTACCTTTTACTGATGCCGTATGTGAAAGCTTCTCAGTGATGCAGTGTGAGAAATCCCAATTGAAGCTGGCTACTGGCATGTGGTCGTATGACCTGTAG 2583 44.99 MAEPMEETTVVDGEPTLPTGEKRTIEIHGDDELAEPQLRKKPRNGCELGPNLRRVAEIVLVMSTMTALRAGKKPTDAEVELMAEARAKLVQICEGLAPKDIVGREGISSLIEDLGLHGNIRDQKLGFRGPRLTIAEKLAQTKKKMEDSKKYIPPSGYGSHPTQKHIISSIENRGTLPSVRMFPSDKSSPVPNSVGGTAGTLPSGHVSVAGSTSMQVQPQLTGNEVRAHNISSGFPINQQGRDPSSLLHGIERPLNGAYGSQMQVNSSVNHSLASAPTWSAQTQSALSAKGGQEHKFPNHSAANAQGTTDSRALRSSSQAARDQSFRPPIPQTGTGNMAGLQPHLQSINFVQGPSVSNSHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGSQPPEKSLGAAVEQKASAGQLKLVSNGGLDLLSHHQPAEDGSNANESSGIKIPNAEEAHGNNLLPIRKDIDEKPTSSTSLNTPAKSLGMVCEPSSAEISSEVSAQHIKSSQAPIGEDESSAKAEPPEESQTAGDNSSNPKPPDIPQIVDQQMGSNGPEEPYSTASSHDTSNVKKDGHEVLQGNNVENFEASIINREQSGTSSNDLHDVEWIGDPHQLTDTRAYYKSCRVDGVTYKVEEFSLFHSNNGKLMPYRLQSLYHEYESGLNWAILKQCYFHEDLPKEVAHLCPCSPEQNEVYTSDGDICLAVGLIRSPCEVLPVAKYKEEHERRKQLGPGADDGIKPTFLCKWFYTEANKEFVPFTDAVCESFSVMQCEKSQLKLATGMWSYDL 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5568448 5579844 + Cp4.1LG14g07380.1 Cpe14g00740 481124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00740 860 Gene3D - 672 847 IPR043151 -
Cpe14g00740 860 SMART PHD_3 393 441 IPR001965 -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 451 485 - -
Cpe14g00740 860 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 832 - -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 232 252 - -
Cpe14g00740 860 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 832 - -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 462 476 - -
Cpe14g00740 860 SUPERFAMILY FYVE/PHD zinc finger 384 450 IPR011011 -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 177 214 - -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 567 587 - -
Cpe14g00740 860 Pfam PHD-finger 394 441 IPR019787 -
Cpe14g00740 860 ProSiteProfiles Zinc finger PHD-type profile. 391 443 IPR019787 -
Cpe14g00740 860 ProSitePatterns Zinc finger PHD-type signature. 394 440 IPR019786 -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 502 645 - -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 283 340 - -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 1 22 - -
Cpe14g00740 860 ProSiteProfiles BAH domain profile. 703 832 IPR001025 GO:0003682
Cpe14g00740 860 MobiDBLite consensus disorder prediction 298 340 - -
Cpe14g00740 860 MobiDBLite consensus disorder prediction 596 640 - -
Cpe14g00740 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 448 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00740 - - - csv:101222588 1359.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00740 Cpe-Chr14:5568448 Cpe04g00558 Cpe-Chr4:5986919 2.59E-06 dispersed
Cpe14g00740 Cpe-Chr14:5568448 Cpe16g00078 Cpe-Chr16:1571677 9.43E-07 transposed
Cpe14g00740 Cpe-Chr14:5568448 Cpe03g00556 Cpe-Chr3:3280065 1.92E-06 transposed
Cpe14g00740 Cpe-Chr14:5568448 Cpe06g00859 Cpe-Chr6:5584602 1.36E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g579 . . . . Bpe09g00149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00915 . Car16g00888 Cpe14g00740 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50539 PF00628 PHD 2.90E-08 CL0390 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00740 Cpe_Chr14 FPKM 38.091892 36.600101 33.612881 34.385445 29.488237 31.068998 28.771261 28.76803 29.953295 30.712294