Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00742 ATGGCAGCTCCACTGGTCGAAGGCGCAGCCGCCGCAGCTCTCCGATCGGTAATGAATCGAGCTCGGCAGGCGGCTGAGCGCTCTGGTCGCCGTTTCGATCAGGTCCGAGTCGTCGCAGTCTCGAAGACAAAGCCTGTGTCTCTCATTCGCCAAGTCTACGACGCCACACACCGCTGCTTCGGTGAGAACTACGTTCAAGAGATTATCGATAAAGCTCCTCAGCTTCCTCAAGACATTGAATGGCATTTTATTGGGCATCTGCAGAGCAACAAAGTTAAATCGCTTCTGGCTGGAGTTCCAAACCTGGCCATGGTTCAGGGTGTAGATAATGAGAAGCTTGCAAATCATCTCGATCGTGCAGTTTCAAACCTCAGGAGGGATCCATTGAAGGTTCTAGTCCAAGTAAACACGAGTGGAGAAATATCTAAATCTGGGGTTGAGCCTTCTGGATGCATCGAACTTGCAAAGCATGTGAAGTTGCGTTGCCCACATCTAGAATTTTCTGGCTTAATGACAATAGGGATGCCAGATTATACTAGCACTCCAGAGAACTTTAAGGTTATATAA 567 48.85 MAAPLVEGAAAAALRSVMNRARQAAERSGRRFDQVRVVAVSKTKPVSLIRQVYDATHRCFGENYVQEIIDKAPQLPQDIEWHFIGHLQSNKVKSLLAGVPNLAMVQGVDNEKLANHLDRAVSNLRRDPLKVLVQVNTSGEISKSGVEPSGCIELAKHVKLRCPHLEFSGLMTIGMPDYTSTPENFKVI 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5593059 5597229 - Cp4.1LG14g07450.1 Cpe14g00742 481126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00742 188 Pfam Alanine racemase, N-terminal domain 17 174 IPR001608 -
Cpe14g00742 188 Gene3D Alanine racemase 4 187 IPR029066 -
Cpe14g00742 188 SUPERFAMILY PLP-binding barrel 11 182 IPR029066 -
Cpe14g00742 188 TIGRFAM TIGR00044: pyridoxal phosphate enzyme, YggS family 19 178 IPR011078 GO:0030170
Cpe14g00742 188 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170
Cpe14g00742 188 PANTHER PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEIN 7 187 - -
Cpe14g00742 188 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 7 187 IPR011078 GO:0030170
Cpe14g00742 188 PIRSF YBL036c_PLPDEIII 1 187 IPR011078 GO:0030170
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00742 K06997 yggS, PROSC; PLP dependent protein - csv:101217387 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00773 Cpe-Chr10:4396379 Cpe14g00742 Cpe-Chr14:5593059 4.47E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g547 . . . . . . Bma10g00564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00894 . Bda05g00711 . . Bpe03g00783 . . . . . . . . . Cpe14g00742 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002558 2 7 2 3 2 2 1 2 2 1 0 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 2 2 3 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00742 Cpe_Chr14 FPKM 39.461983 44.516708 52.818939 52.234455 36.807781 31.892618 39.653816 12.113264 13.97894 12.757381