Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00747 ATGGCAGCTTTTCAACTCACAAATCTATCATCTTCTTCGATTCCCCCTCAGTTTTATCCCAAGACATCCTTCCTTCCCTCCAACTTTCACTGGACTTGTTCCTCCTTTAATGGCAAGCGGAAATGTCCTTCTCGAAGACACCATGTTGGTGTTGTGGGCTGCTCATTTTCGCATATGGATTCCGCTAAGATTAAGGTAGTGGGTGTTGGTGGAGGCGGCAACAATGCTGTTAATCGCATGATTGGCAGCGGATTGAAGGGTGTTGATTTCTATGCTATAAACACGGATTCTCAAGCTCTATTACAGTCTGCTGCTGAGAATCCACTTCAAATTGGAGACCTTCTGACGCGTGGGCTAGGTACTGGTGGGAATCCACTTTTAGGGGAACAAGCGGCAGAAGAATCAAAAGAAGCGATAGCCAGTGCTCTCAAGGGCTCTGATCTTGTATTCATAACGGCAGGTATGGGTGGAGGCACTGGGTCTGGTGCGGCCCCAGTCGTTGCCCAGATTTCCAAGGAGGCAGGTTACCTGACTGTTGGTGTTGTTACTTTTCCATTCAGCTTCGAAGGAAGAAAGCGATCCTTGCAGGCTCTGGAGGCCATTGAAAAGCTGCAGAAAAATGTTGACACTCTTATAGTAATCCCCAATGATCGGTTGCTTGATATTGCTGATGAGCAGACACCTCTTCAAGATGCTTTCCTTCTTGCTGATGATGTCCTACGTCAAGGAGTACAGGGAATTTCTGACATAATAACGATTCCAGGGCTGGTCAATGTGGATTTTGCTGACGTGAAAGCCGTCATGAAAGACTCGGGAACTGCAATGCTTGGAGTTGGTGTTTCCTCTAGTAAAAATCGCGCAGAAGAAGCGGCTGAGCAAGCAACTTTGGCTCCGTTGATCGGATCATCCATTCAGTCAGCTACAGGAGTAGTATATAACATTACTGGGGGAAAGGACATAACTCTACAGGAAGTGAACAGAGTATCTCAGGTTGTGACAAGTTTGGCAGATCCATCTGCAAACATAATATTTGGAGCAGTTGTGGATGATAGGTACAGTGGAGAAATCCATGTAACTATAATTGCAACAGGATTCTCTCAGTCCTTTCAGAAGACATTGTTAGCTGACCCCAGGGCTTCCAAACTTATTGATAAAGTGAGTGGAGGAGTTCAAGATAAAAGCACCAAGACTTCTTCAAACCTTCCTCTTAGCTTATCATCGCCTGCTGCTGCTGCTGCTTCACCGACACTTCCTAATCGAGGTCGAAGGCTCTTCTTTTAG 1281 46.06 MAAFQLTNLSSSSIPPQFYPKTSFLPSNFHWTCSSFNGKRKCPSRRHHVGVVGCSFSHMDSAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALLQSAAENPLQIGDLLTRGLGTGGNPLLGEQAAEESKEAIASALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTFPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKTLLADPRASKLIDKVSGGVQDKSTKTSSNLPLSLSSPAAAAASPTLPNRGRRLFF 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 5695628 5700578 + Cp4.1LG14g07460.1 Cpe14g00747 481131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00747 426 Pfam Tubulin/FtsZ family, GTPase domain 63 223 IPR003008 GO:0005525
Cpe14g00747 426 ProSitePatterns FtsZ protein signature 2. 147 168 IPR020805 GO:0005525
Cpe14g00747 426 SMART Tubulin_4 63 255 IPR003008 GO:0005525
Cpe14g00747 426 Pfam FtsZ family, C-terminal domain 272 365 IPR024757 -
Cpe14g00747 426 Gene3D - 271 376 IPR037103 -
Cpe14g00747 426 CDD FtsZ_type1 79 364 IPR000158 GO:0003924|GO:0005525
Cpe14g00747 426 SUPERFAMILY Tubulin nucleotide-binding domain-like 62 258 IPR036525 -
Cpe14g00747 426 Hamap Cell division protein FtsZ [ftsZ]. 59 388 IPR000158 GO:0003924|GO:0005525
Cpe14g00747 426 ProSitePatterns FtsZ protein signature 1. 94 128 IPR020805 GO:0005525
Cpe14g00747 426 PRINTS Cell division protein FtsZ signature 148 168 IPR003008 GO:0005525
Cpe14g00747 426 PRINTS Cell division protein FtsZ signature 176 197 IPR003008 GO:0005525
Cpe14g00747 426 PRINTS Cell division protein FtsZ signature 239 261 IPR003008 GO:0005525
Cpe14g00747 426 PRINTS Cell division protein FtsZ signature 262 283 IPR003008 GO:0005525
Cpe14g00747 426 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 10 426 IPR045061 GO:0003924|GO:0005525
Cpe14g00747 426 SMART Tubulin_C_4 257 374 IPR018316 -
Cpe14g00747 426 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 156 162 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cpe14g00747 426 PANTHER BNAA02G09160D PROTEIN 10 426 - -
Cpe14g00747 426 SUPERFAMILY Tubulin C-terminal domain-like 257 372 IPR008280 -
Cpe14g00747 426 TIGRFAM ftsZ: cell division protein FtsZ 59 373 IPR000158 GO:0003924|GO:0005525
Cpe14g00747 426 Gene3D Tubulin/FtsZ, GTPase domain 54 270 IPR036525 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00747 K03531 ftsZ; cell division protein FtsZ - csv:101222908 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00265 Cpe-Chr3:1358864 Cpe14g00747 Cpe-Chr14:5695628 1.86E-97 dispersed
Cpe10g00282 Cpe-Chr10:1661697 Cpe14g00747 Cpe-Chr14:5695628 3.88E-110 dispersed
Cpe14g00747 Cpe-Chr14:5695628 Cpe13g00443 Cpe-Chr13:4753741 4.49E-06 dispersed
Cpe14g00747 Cpe-Chr14:5695628 Cpe19g00471 Cpe-Chr19:4125652 1.51E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g491 . Blo03g01447 Bda07g00354 Bda09g00395 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01210 . . . . . . . . . Bma07g01303 . . . . . . . . Cpe14g00747 . . . . . . . . Cla05g01497 Cam05g1614 . Cco05g1643 Clacu05g1597 Cmu05g1496 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00747 Cpe_Chr14 FPKM 24.11574 25.997538 18.170441 16.423294 22.259834 20.407413 17.041954 9.629499 9.147839 8.807359