Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00777 ATGGAGGAATCTCAGGAAATCCTACTGAATTCCCTCCAAAAATCGGGTGTTTCAGTCCCTCCAGATGTTTCCTCGATTCGGAACTTAACTCCTCCGCTCTTGTTCTCGATCTGTGCTCAAGTCTTGAATCGAATACATGGCCAAACTCAAATCCCCTACGCCACTTCTCTGCCGTACTCCGTCGCCGATCAGTTCAAGATATGTACTGAAATCGCTTCCGCTATTAAGGATCTGGGTTACATAGGAGATATGAGCTTCCACAAGTTCTTGTATCCATCTGAAGAGGACTTGTATAAGTTGATAAGATTCTTGGTGGAGAGACTTCCTGAAGTTTCTGATGGAAAATCCAAGGTTTTGGAAGATGGTGATGGCAGAAAAGAAACGAAAGCTGACACTCTCAAATGCCACTATGTGTCGGGCCAATCAGACGATATCGACACTGATGATTCCGTTTTTACCCATCAGAAGGTTGAGAACAAGCTTTCGGATCTTAATATTATTGTTGAAGAGACAAAATCTTCAGATTCCAGCGTCGGTCGATTCTCTGATTCCGGTGAAGCAGCTATGTTTGATAACCTTGTTAATGCTCCCAAAGATCAGTCTGAGGTTTCAGGAAACGAATCAGTTGCAGTGCAGGGGAATAATGGACAAGTATCAATTTCCAGACATGAAGTTAGTTCTTACATTCAAAAGAATGATGAAGATCAAGAGATCAGACCATTGGAAGAGGTCAGTACAAAAGCTTCTGAATTAGAGCATCTTCATGTAGAGTTAGAAAGGTTGAAGGCAGCGACCGGAATTGTATTTGATGATAATCGTTCGATTGAAGTCCATCTTCAGGAACTGGAGGAGCAAATCAATTCTAGAAAGCTGAATCTTCTTGCAGTGAAGTCGGGGGCTGCAGAGAAGGAGCTTTTAGAAAATAAAAGGCGAAATCTTCAAGAATCACTATGCGTAAGTAATCCGAAGGCTCAAGAAAAGCTGCAAAAATTGAGAGAGTTTGAATTGGAAAAGCAGCTCATTGAGTCGGAAATCAGGAGGCGGGAGGAAGAAAATTATAATCTCTCAACAGAGCTTAAGAAGCAGCCAAAACAGGCACCGAGACGATCCTACATCGATAGGGTGAAGGAGATCACAAAAAATAGTCGGAAACAAGATGCTGACATCGACCGAATCCTTAAAGAAACTAGAGCGCTTCAGCTAGAAAGTAACAATATTCAAGAACGCCTCCATAGAACCTACGCAATTGTGGATGAGCTAGTTCTCAGGGAAGCAAAAAAAGAAGGCATAGGCAAGAAAGCACACAAACTCCTGACTAGTATCCATGAGAATTTCGGAGAGATCTCGAACAAAATCCTGTCCACGGATAGATTAAGAAGAGAAACTGCAGAATACGAGAAGAAGATAGGGGCCTCGGCATCCCGATGTTTAGATTTTAACAAACTACAAGCTGATCTGGATGCTATCAGGAGGGAAAATAGTTGCCTAGAGCAAAATCTCTGCCATAAAAAACACATTGACCAAATGTAG 1530 42.16 MEESQEILLNSLQKSGVSVPPDVSSIRNLTPPLLFSICAQVLNRIHGQTQIPYATSLPYSVADQFKICTEIASAIKDLGYIGDMSFHKFLYPSEEDLYKLIRFLVERLPEVSDGKSKVLEDGDGRKETKADTLKCHYVSGQSDDIDTDDSVFTHQKVENKLSDLNIIVEETKSSDSSVGRFSDSGEAAMFDNLVNAPKDQSEVSGNESVAVQGNNGQVSISRHEVSSYIQKNDEDQEIRPLEEVSTKASELEHLHVELERLKAATGIVFDDNRSIEVHLQELEEQINSRKLNLLAVKSGAAEKELLENKRRNLQESLCVSNPKAQEKLQKLREFELEKQLIESEIRRREEENYNLSTELKKQPKQAPRRSYIDRVKEITKNSRKQDADIDRILKETRALQLESNNIQERLHRTYAIVDELVLREAKKEGIGKKAHKLLTSIHENFGEISNKILSTDRLRRETAEYEKKIGASASRCLDFNKLQADLDAIRRENSCLEQNLCHKKHIDQM 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6120218 6124287 + Cp4.1LG14g07750.1 Cpe14g00777 481161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00777 509 Coils Coil 272 292 - -
Cpe14g00777 509 PANTHER JM1 PROTEIN 1 119 IPR008530 -
Cpe14g00777 509 PANTHER JM1 PROTEIN 176 502 IPR008530 -
Cpe14g00777 509 Coils Coil 324 351 - -
Cpe14g00777 509 Pfam Coiled-coil domain-containing protein 22 1 113 IPR008530 -
Cpe14g00777 509 Pfam Coiled-coil domain-containing protein 22 199 471 IPR008530 -
Cpe14g00777 509 Coils Coil 241 261 - -
Cpe14g00777 509 Coils Coil 479 499 - -
Cpe14g00777 509 Coils Coil 296 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00777 K23343 CCDC22; coiled-coil domain-containing protein 22 - csv:101210296 773.467
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g709 . . . . Bpe09g00115 . . Bma13g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00412 . Cme06g02760 . . . Bda12g00977 . . . . . . . . . . . Cpe14g00777 . Bhi11g00457 . . . . . . . . . . . . . . . Chy06g01900 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009968 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00777 Cpe_Chr14 FPKM 7.761536 8.616356 12.387919 11.705309 10.099393 11.199972 11.287668 19.916269 18.009491 19.991253