Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00778 ATGGGGCTTCTTGATTCTTTGTTGGATAGAGATTCAAGAAAGTTTATCAAACGAAAAGACAGCGATGCAGGAGAAGCTGAACCTCTCATATTCTATAAATCCGCAGGCCGAGCGCTCGAAGAAATTAGAGGTTCGCTCTATAATGAACTACGAACTTCAGACGGGGCGAAACGCCAACAGCAACGATACTGCGGTCCGGTCGTGGCGATGACATTCAATTTCATGGTTGCTGTTGGAATCATTATGGCAAACAAATTAGTTATGGGAAGAGTTGGATTTAACTTCCCAATATTCCTTACATTAATCCATTATACAGTTGCTTGGTTTCTACTAGCAATTTTCAAGGCACTTTCTTTGCTTCCTGTTTCTCCTCCTAGCAAAACCACTCCCTTCTCTTCCATTTTCTCCTTAGGTGTTGTCATGGCTTTTGCTTCAGGTCTTGCCAATACTAGTCTCAAGCATAACAGTGTTGGATTCTATCAGATGGCTAAGATTGCAGTAACACCCACCATTGTTTTCTCAGAGTTCATACTTTTCAAGAAGACCATTTCATTCAAAAAGGTTATGGCTTTGTCTGTTGTCTCTGTTGGCGTGGCGATCGCGACGGTAACGGATTTAGAGTTCAACCTGTTCGGCGCTTTGGTTGCGATTTCTTGGATAATCCCGAGTGCTATAAACAAGATTTTGTGGTCGAATCTGCAGCAGCAAGCGAGTTGGACGGCGTTAGCGTTGATGTGGAAAACTACTCCAATTACAATATTTTTCTTACTTGCTCTCATGCCTTGGCTGGATCCACCAGGAGTTCTGTCTTTTAGATGGGATCTCAGTAGTTCAACTGCTATTTTGATATCAGCTCTGCTTGGTTTTCTCTTGCAATGGTCTGGAGCTTTGGCACTAGGTGCAACCTCTGCAACATCTCATGTTGTTCTGGGACAGTTCAAGACTTGTGTGCTTCTGCTGGGAAGTTATTTTATTTTCAGGTCGGATCCCGGGTTCGTGAGCATTTGTGGGGCGATCACAGCTCTCGGCGGAATGTCTGCTTACACATCCCTTAATCTGCAGCAACAACACGACAACAAGCAACTTCCAAAGCATAACTTGCCGATGCCGATGCCGATGCCGATGCCCGAAAACAGCAGCCTTGTAGAAGATGCTGCAAAGTTGGATGTACAAAGTTCTGATGTTGCTGTGTAG 1194 44.3 MGLLDSLLDRDSRKFIKRKDSDAGEAEPLIFYKSAGRALEEIRGSLYNELRTSDGAKRQQQRYCGPVVAMTFNFMVAVGIIMANKLVMGRVGFNFPIFLTLIHYTVAWFLLAIFKALSLLPVSPPSKTTPFSSIFSLGVVMAFASGLANTSLKHNSVGFYQMAKIAVTPTIVFSEFILFKKTISFKKVMALSVVSVGVAIATVTDLEFNLFGALVAISWIIPSAINKILWSNLQQQASWTALALMWKTTPITIFFLLALMPWLDPPGVLSFRWDLSSSTAILISALLGFLLQWSGALALGATSATSHVVLGQFKTCVLLLGSYFIFRSDPGFVSICGAITALGGMSAYTSLNLQQQHDNKQLPKHNLPMPMPMPMPENSSLVEDAAKLDVQSSDVAV 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6125046 6129461 + Cp4.1LG14g07760.1 Cpe14g00778 481162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00778 397 Pfam Triose-phosphate Transporter family 71 348 IPR004853 -
Cpe14g00778 397 PANTHER OS06G0297600 PROTEIN 26 365 - -
Cpe14g00778 397 PANTHER SOLUTE CARRIER FAMILY 35 26 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00778 - - - cmos:111438759 739.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01334 Cpe-Chr4:10939192 Cpe14g00778 Cpe-Chr14:6125046 1.66E-137 dispersed
Cpe14g00778 Cpe-Chr14:6125046 Cpe05g00815 Cpe-Chr5:5042776 1.24E-34 dispersed
Cpe14g00778 Cpe-Chr14:6125046 Cpe18g00647 Cpe-Chr18:6620353 2.12E-166 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00413 . Cme06g02761 . Blo10g00874 . . . . . . . . . . . . . Cpe14g00778 . Bhi11g00458 . . . . . . . . . . . . . . . Chy06g01899 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001987 2 5 2 0 1 2 3 2 2 2 2 2 3 2 2 2 2 3 3 2 2 2 2 2 1 2 1 4 4 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00778 Cpe_Chr14 FPKM 14.299868 15.606041 12.015014 11.385104 12.501699 11.882298 11.247334 8.819906 11.005108 9.970968