Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00781 ATGGGTGTGAAGGATCGTCAAATTGCGACGAACTCGCCTAATGCGAAAGTAGAAGTAGGAGAGATCGACACTAGTGCACCGTTCCAGTCTGTTAAGGATGCTGTCAATTTGTTTGGTGAAGGTTCTTTCTCGGGGGAACGAGTGATTATGAGGAAGGCGAAACAACCTCATTCTGCAGAGAGAGTGTTTGCAAAAGAGACTCAACTTCACTTGGCCGAAAAAGAACTGAACAAACTAAAGAATCAGCTAAAGAATGCTGAAACGACCAAATCTGAAGCGCTCGTTGAGCTCGAAAATGCTAAAAGAGCTGTTGAGGACTTGACCAAGAAGCTACAATTGCTGAGGGAATCGAAAGAATCTGCCGTGAAGGATTCGGAAGCTGCCAAGGCTCGAGCGAAGCAGTTTGAGGAGGCGAATGGAAACAATCATTCGGGAAATGATTGTGGTTGGAAACAAGACTTGGAAACGACCCGAGATCGGTATATGGTTGTGATCGGAGAACTAGATGCTGCAAAGCAAGAATTGAGGAAAATCCATCAAGATTCTGATGCGTCGTTGGAAGCAAAAGTAGCTGCTTTGAAACAGGTGACGGAGGCCGAGGAATCGGTCGAAACACACAAGGTGAAAGCAAATGAACTTTCTAAGGAAATTTTAGCTGCACAGGAATCCATTGAAAAGCTCAAGCTAGCATCCCTTCAAGCACATAAAGAACAAGAACAGATATTTGTTGAGAAAGATGTCCAGAGAAAGTCTTATAAAGCAGCTCTTGAAGAGTCGGCGAAAAAATTGTTTTCGTTACAGAAGGAGATCGACCCTGATGTCACGAGGAATCTTGAATTGCAGTTGAGCGAGACGATGAATGAAATTGGGGAACTGCAGAAACAAATGGACGATAAAAAGGCGTCGGATTTAGATTCGGTGAAGAACGTCACATCGGAGCTTGATGATGCAAAAGAGTCCTTACAAAAAGTAGCTGAAGAGGAAAGATCTCTCCATAGCTTGGTTGAAGCTTTGAAGTTGGAACTCGAGAATGTGAAGAAAGAGCATTCCGAACTCAAGGAGAGAGAAGCGGAGGCCGAATCTACTGCTGGGAATTTGCATGTCGAGCTCCGAATGAGAAAATCTGAACTCGAAGCGTACCTCGCAGAAGAATCTAAAGCAAGAGGTGCTTGTGAAGATATGCTTTCAACTCTCAACCAGCTATCGTCGGAAACGGAAAATGCGAGACGGGAAGTGGTAGAGATGAAAAATAAAGCCGAAGAGTTGAGGAAGGAAGCGGAATCCACCAAAATAGCATTGGAAGCTGCTGGGAAGCAGCTGAGAGTTGCACTGGAAGAAGCTGAAGAAGCAAAAGCAGCCGAAGCTAGGGCCCTTGAGCAGATTAAGGTACTGTCGGAGAGAACCAATGCTGCACGAGCTTCGACTTCCGAGTCGGGGGCTAACATCACTATCTCCAGGGAAGAGTTCGAGTCGTTAAGCCGGAAAGTCGAGGAGTCCGACACCTTAACCGAAATGAAAGTAGCTGCTGCATTAGCTCAGGTTGAAGCTGTGAAGGCTAGCGAAAATGAAATTCTACAAAGGTTAGAAGCATCCCAGAAGGAAATTGAGGACATGAAGACAGCAACTGAGGAAGCTTCAAAGAAAGCAAAGATGGCTGAAGCAGCTAAGAAGGCCGTGGAAGGAGAGCTAAGACGGTGGCGCGAGCGAGAGCAGAAGAAAGCAATGGAAGCTGCATCAAGAATTTTGGCTCAAACGTCGGTGCCTTTGGAATCACCTCCAAGCCACAACATGATTCAAAAGCAGAGCACATCAATGAAAATGGTGTCGAAAGACAAAACCTTCTCAAAGAAGGTACTCTTACCAAACCTTAGCGGCTTATTTGTTAGGAAAAAGAACCAGGTCGACGGTGGATCGCCGTCGTACCTGCCCGGCGAGAAGTCTGTGTGA 1947 45.92 MGVKDRQIATNSPNAKVEVGEIDTSAPFQSVKDAVNLFGEGSFSGERVIMRKAKQPHSAERVFAKETQLHLAEKELNKLKNQLKNAETTKSEALVELENAKRAVEDLTKKLQLLRESKESAVKDSEAAKARAKQFEEANGNNHSGNDCGWKQDLETTRDRYMVVIGELDAAKQELRKIHQDSDASLEAKVAALKQVTEAEESVETHKVKANELSKEILAAQESIEKLKLASLQAHKEQEQIFVEKDVQRKSYKAALEESAKKLFSLQKEIDPDVTRNLELQLSETMNEIGELQKQMDDKKASDLDSVKNVTSELDDAKESLQKVAEEERSLHSLVEALKLELENVKKEHSELKEREAEAESTAGNLHVELRMRKSELEAYLAEESKARGACEDMLSTLNQLSSETENARREVVEMKNKAEELRKEAESTKIALEAAGKQLRVALEEAEEAKAAEARALEQIKVLSERTNAARASTSESGANITISREEFESLSRKVEESDTLTEMKVAAALAQVEAVKASENEILQRLEASQKEIEDMKTATEEASKKAKMAEAAKKAVEGELRRWREREQKKAMEAASRILAQTSVPLESPPSHNMIQKQSTSMKMVSKDKTFSKKVLLPNLSGLFVRKKNQVDGGSPSYLPGEKSV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6156393 6160416 - Cp4.1LG14g07790.1 Cpe14g00781 481165

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00781 648 Coils Coil 62 138 - -
Cpe14g00781 648 MobiDBLite consensus disorder prediction 583 609 - -
Cpe14g00781 648 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 5 602 - -
Cpe14g00781 648 Coils Coil 511 569 - -
Cpe14g00781 648 Coils Coil 275 302 - -
Cpe14g00781 648 Coils Coil 196 230 - -
Cpe14g00781 648 Pfam Weak chloroplast movement under blue light 21 572 IPR008545 -
Cpe14g00781 648 MobiDBLite consensus disorder prediction 584 609 - -
Cpe14g00781 648 Coils Coil 391 467 - -
Cpe14g00781 648 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 5 602 - -
Cpe14g00781 648 Coils Coil 307 362 - -
Cpe14g00781 648 MobiDBLite consensus disorder prediction 629 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00781 - - - csv:101202792 1022.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00177 Cpe-Chr2:907047 Cpe14g00781 Cpe-Chr14:6156393 3.01E-32 dispersed
Cpe06g00070 Cpe-Chr6:347765 Cpe14g00781 Cpe-Chr14:6156393 5.19E-06 dispersed
Cpe06g00157 Cpe-Chr6:852081 Cpe14g00781 Cpe-Chr14:6156393 5.95E-30 dispersed
Cpe10g01241 Cpe-Chr10:9558107 Cpe14g00781 Cpe-Chr14:6156393 3.45E-102 dispersed
Cpe14g00781 Cpe-Chr14:6156393 Cpe20g00681 Cpe-Chr20:4690820 8.05E-108 dispersed
Cpe19g00144 Cpe-Chr19:1141087 Cpe14g00781 Cpe-Chr14:6156393 2.79E-07 dispersed
Cpe13g01137 Cpe-Chr13:9050517 Cpe14g00781 Cpe-Chr14:6156393 5.30E-23 transposed
Cpe18g00779 Cpe-Chr18:7387974 Cpe14g00781 Cpe-Chr14:6156393 3.46E-13 transposed
Cpe14g00781 Cpe-Chr14:6156393 Cpe08g00839 Cpe-Chr8:6666648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00781 Cpe_Chr14 FPKM 5.479835 6.42246 2.077603 1.310251 6.506313 8.027242 6.268225 0.0 0.0 0.0