Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00788 ATGGTGCGAGAGCAAGACCAATACATGCCGATTGCTAATGTGATACGCATCATGCGACGAATTTTACCCTCTCATGCAAAGATATCCGACGATGCCAAGGAGACCATCCAAGAATGTGTATCGGAGTACATCAGCTTCATTACTGGAGAGGCTAACGAGCGATGCCAACGGGAGCAACGCAAGACAGTGACAGCAGAGGATGTCCTTTGGGCTATGGGGAAGCTCGGCTTTGACGACTACATCGAGCCACTAACTATGTTCCTCAATCGATACCGTGAGTCGGAGAGTGATCGAGTTCGTACTGAGCCGATCTTGAGGCGCAATGTGGATTATGTGCCACAAGTGGGGATGATGCCACCATACGGGCAAGCGTTTCCACTGGGGCACACCTCGACAGGGATGTTCGATGCAATGGGCGGATATTATGGTGGAGGTAGGAGTGGCGGGACGAGCTCCGGAAACGGTAATCAGCTTTGA 477 51.78 MVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTMFLNRYRESESDRVRTEPILRRNVDYVPQVGMMPPYGQAFPLGHTSTGMFDAMGGYYGGGRSGGTSSGNGNQL 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6208777 6209253 + Cp4.1LG14g07850.1 Cpe14g00788 481172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00788 158 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 124 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe14g00788 158 Gene3D Histone, subunit A 1 109 IPR009072 GO:0046982
Cpe14g00788 158 PRINTS CCAAT-binding transcription factor subunit A signature 36 54 - -
Cpe14g00788 158 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Cpe14g00788 158 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Cpe14g00788 158 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 2 124 - -
Cpe14g00788 158 SUPERFAMILY Histone-fold 5 98 IPR009072 GO:0046982
Cpe14g00788 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 72 IPR003958 -
Cpe14g00788 158 ProSitePatterns NF-YB/HAP3 subunit signature. 39 55 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00832 Cpe-Chr8:6626325 Cpe14g00788 Cpe-Chr14:6208777 1.25E-36 dispersed
Cpe08g00833 Cpe-Chr8:6631549 Cpe14g00788 Cpe-Chr14:6208777 3.48E-93 dispersed
Cpe08g00834 Cpe-Chr8:6637103 Cpe14g00788 Cpe-Chr14:6208777 1.13E-26 dispersed
Cpe14g00788 Cpe-Chr14:6208777 Cpe16g00379 Cpe-Chr16:5421766 2.97E-45 dispersed
Cpe14g00788 Cpe-Chr14:6208777 Cpe08g00829 Cpe-Chr8:6614923 7.08E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50543 PF00808 CBFD_NFYB_HMF 1.30E-25 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00788 K08065 - csv:116402762 262.307