Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00791 ATGTGTGAAGGATGTGCAACTAAATTGATCATGGGTGAAGAAGATACAACGAAAAATACCATTGAGAATACAAAAAATGAAGCCAGTGGAGAAGATTTGAAAACAAAAACCAGTGAGACCATGGAAAATGGGAACAATAAAGAAGATAAAATGAAAAGTATTGTTGAGACCATGGAAAATGGAACCACTGAAGATGATAAAATGACAAATACCGTTGAGACTGTGACAAAGGGAACCAGTGAACTGGAAAAAACCAACGAGACTTTGCCTAAGAGGGAGGAAAATGGAGTGAAAGAACCGGAAATTGAGCAGGGTGCTGGTGTGAAGGCAGAGGTCATGAAAATGGAAGAAGAGCGCAAGATCAAGGATGATGAGGAAATCAATGGAGAAAAGGCGAAGGATAAAAAGGAGGAAGCTAACGTTCAGGCAATTGAGGAAGATGTGAATCCAAATGATAAGAAGAGTGAACAAAGTATGGATATAGAAAATGAAGGGAATGAGGATGTCAAAGATGGAGAGAATGAGGATGTCAAAGATGAAGTAACTGAGGATGCCAAAGATGAAAGAACCGAGGATGCCAAAGATGAAGGACCTGAGAATGCCATGGATGAAAAAACTGAGGATGCCAAAGATGACAACACTGAGGATGCCAAAACTGAAACTGAGGATACCAAAGATAAGGTAGAGAAGGTTGATAGCCAAATGGAAGAGGATGACAAGGAATTGAAGGATAAAGATCCCAACGAGGGGAAACCAAATAAAAGAAGAAAGAGAATGAGTGTGGTTAAATCAAAGGGAAAGAACCAAGAGGATGAAAAGGAGGAGGCAGAAATAAGGACTCCCATTATTGATCGCCCTGTACGTGAGCGCAAATCAGTTGAAAGGTTGGTGGCATCAATTGAAAGACATGCTGTGAAGGAATTCCAGATTGAAAAGGGCCGTGGTACTCCACTTAAGGATATACCCAATGTGGCATTCAAATTGTCAAGGAAAAAGGCTGATGACACCTTCAGGCTGCTTCATTCAATTATATTTGGAAGGAGAGGAAAGGCATTTCAGATTAAGAGCAACATATCCAGGTTTTCAGGTTTTGTGTGGCATGGAGATGAGGAAAAACAAAAGACCAAAGTCAGAGAAAAAATTGACAAGTGTAATAAAGAGAAATTATTGGAATTGTGTGATGTGCTGGACATTCCTGTTGTGAAGGCTACCACAAGGAAGGAAGATATTGTTGGCAAGCTTATAGAATTTTTAATAGCTCCTCATGCTACAACTACTGTTCTCACAGAAAAAGAAAAGTCGAGCAATGGTAAAAAGCGTAAACGGGCGGTAAAAGGAGAAATGTCAACTCCTGGAGACAATAGTTCAAAACATCCACCAAAGAGTCGTAGAAAAAGGGGAAATACTGCAAGATCTGAGCTGACAAAAAATTCAAGTGATGAAGATGACGAGTTAGAAGAAAAGGAAGCAGAAGAAGAAAATGACAAGGAAAATGAGAATGAAATCACGGAAAAATCCGATGATGAAATGTCCGAGCAGCCAAAAAGTGAAGATATCAATGACCCAACTGATGAATCTGAGGAAGAAAAACCCAAATCTAGTTCAAAAAGTTCATCTAGAAAGAGGGGATCTGTAAGAAAAGCAAGAAGCAAGAAAGCTAGAGGCTCCAATAAATCTGATTCAGCAAAATTGACAGCAAAGAGGACATCGTCAAGTCTTGCTAAGGTTGATGATAGTGATGCTAGTCCAAAGGTATTCTCTAGGAAAAAGAATAGTGAAAAAGTAAGCAAGGCCTCAACTCCATCAAAATCTGCTGCCAAGGAGAAGCCTGGGAAAAAGATTATTAAAGGGAAGGACAAAACCAAGGAGGAGAAAACAAGGCCAAGCGACGATGAGCTCAGGGAAGCAATATGTGAAATTCTTAAAGTAGTCGACTTCACTACAGCCACCTTCACCGACATTCTGAAGCAACTTGCTCGGCAATTCAAGACAGATCTCACGCCCCAAAAGTCGTCGATAAAACTTATGATCCAAGAAGAGCTTACGAAACTGGCAGACGAAGCAGAAGAAGAAGATGGCAACGCCAACACCGAGAAGGATGGAAAACAGGTAGCTCAAGAGGTGGAAACATGA 2133 40.46 MCEGCATKLIMGEEDTTKNTIENTKNEASGEDLKTKTSETMENGNNKEDKMKSIVETMENGTTEDDKMTNTVETVTKGTSELEKTNETLPKREENGVKEPEIEQGAGVKAEVMKMEEERKIKDDEEINGEKAKDKKEEANVQAIEEDVNPNDKKSEQSMDIENEGNEDVKDGENEDVKDEVTEDAKDERTEDAKDEGPENAMDEKTEDAKDDNTEDAKTETEDTKDKVEKVDSQMEEDDKELKDKDPNEGKPNKRRKRMSVVKSKGKNQEDEKEEAEIRTPIIDRPVRERKSVERLVASIERHAVKEFQIEKGRGTPLKDIPNVAFKLSRKKADDTFRLLHSIIFGRRGKAFQIKSNISRFSGFVWHGDEEKQKTKVREKIDKCNKEKLLELCDVLDIPVVKATTRKEDIVGKLIEFLIAPHATTTVLTEKEKSSNGKKRKRAVKGEMSTPGDNSSKHPPKSRRKRGNTARSELTKNSSDEDDELEEKEAEEENDKENENEITEKSDDEMSEQPKSEDINDPTDESEEEKPKSSSKSSSRKRGSVRKARSKKARGSNKSDSAKLTAKRTSSSLAKVDDSDASPKVFSRKKNSEKVSKASTPSKSAAKEKPGKKIIKGKDKTKEEKTRPSDDELREAICEILKVVDFTTATFTDILKQLARQFKTDLTPQKSSIKLMIQEELTKLADEAEEEDGNANTEKDGKQVAQEVET 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6219348 6229167 - Cp4.1LG14g07910.1 Cpe14g00791 481175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00791 710 MobiDBLite consensus disorder prediction 84 100 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 479 498 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 581 596 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 432 447 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 77 276 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 606 631 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 182 255 - -
Cpe14g00791 710 Coils Coil 122 142 - -
Cpe14g00791 710 Coils Coil 471 505 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 559 577 - -
Cpe14g00791 710 Pfam DEK C terminal domain 628 681 IPR014876 -
Cpe14g00791 710 SUPERFAMILY DEK C-terminal domain 621 681 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 684 710 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 537 553 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 499 536 - -
Cpe14g00791 710 PANTHER PROTEIN DEK 178 693 - -
Cpe14g00791 710 Gene3D - 618 683 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 428 631 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 695 710 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 18 51 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 16 51 - -
Cpe14g00791 710 MobiDBLite consensus disorder prediction 110 176 - -
Cpe14g00791 710 PANTHER DEK PROTEIN 178 693 IPR044198 GO:0003677|GO:0006325
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00791 K17046 DEK; protein DEK - csv:101204393 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01626 Cpe-Chr4:12593938 Cpe14g00791 Cpe-Chr14:6219348 2.47E-29 transposed
Cpe14g00791 Cpe-Chr14:6219348 Cpe08g00828 Cpe-Chr8:6603183 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00791 Cpe_Chr14 FPKM 9.389251 9.888909 10.237834 10.235632 13.731002 12.377667 13.713696 13.36008 12.85954 13.360998