Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00796 ATGGCTTCCACTGGGAATCCAAATCCAAATCCAACGAATCCACCATTTGATGTCCAGAAATTCTTTAAACCCACCATTTCCAACCCTCCGCCGACCTCCCAAAACCCTACCCTTTTGAATTCATCGCCATTTCCGCCTCCTTCTTCCTCTTACCCTCCTCCCACTGGTCCTTTCTCTTACCCACTTCAGAACGCCCCATTTCATCATCCCTATCATTCTCCTCATCTTCCCAATCAAGTTCCGTACTCTCAGGACCAGTTCTCTAATCTTCACCATCAGCGCTCTCTTTCTTATCCCACGCCGCCGCTTCAGCCTTCTCCTCCTCCGGTCAACGTCGGCGTCCCGCAGAACAATCCGGCGCAGAGCTCTGGTGCTCGGATAATGGCGATGATTAGAGCCCCTGGTTCTAATCTCGAACAACTCCCTCTTCCCCCTGCTCCATTGGCTTCGATGCCGTCTCCTTCCTCGGGCATTCCTGAATCTTCAGCGCCTCCTAATATTCCCATCATGACTACCATTCCCATGATACAGGGGGTTAATCCTGGCATTTCTCCTACCGGGCCGGTTCGAATGCCGAGTAGTAAGCTTCCTAAAGGCCGGCATTTGATCGGTGATCATGTGGTGTATGATGTGAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTGACGCCTATTACCAAATATGGTTCAGATCCTCAGCTTGTGCTGGGGCGTCAAATTGCGGTCAACAAGACATATATATGCTATGGATTGAAACAGGGGAACATTCGAGTTCTTAATATCAATACCGCGCTAAGATCTTTGTTTCGAGGCCATGAAAAGAGGGTCACTGACATGGCATTCTTTGCGGAAGATGTTCATCTTTTGGCTAGTGTTGACGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAAACTAAGCCACAAATCACTGGGAAAGAAGTTTTGGTTGTTGGATTTGGGAAGTCTGTTCTGAGGATTGACACAACAAAAGTTGGGAAGGGTGAAAGCTTTTCTGCCGAAGCTCCTATCAAATTTTCTCTTGATAAGTTGATTGATGGCGTCCAGCTTGTTGGTAAGCATGATGGAGAAGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCTCGATTGGTTTCTGCTTCTATGGATGGAACGATCAAAATCTGGGAAGATCGCAAGGCATCACCTTTGCTGGTTTTGAGACCTCATGACGGCCAACCAGTTAATGCAGCTACTTTCTTGACTGCTCCTAATCGACCAGATCACATTATACTCATAACAGCTGGGCCTCTAAATTGGGAAGTGAAAATATGGTCATCTGCAAGCGAGGAAGGTTGGCTGCTTCCTAGTGATGCCGAATCATGGAAATGCACCCAGACCCTGGAACTGAAGAGTTCAGCTGAAAGTCAAGTTGAAGAGGCTTTCTTTAATCAAATTGTAGCATTATCTCCAGCTGGCCTTCTTTTGCTTGCTAATGCTAAGAAGAATGCTATATATGCAATTCACTTAGATTATGGTCTTAATCCAGCCTCGACACGGATGGATTATATAGCAGAGTTTACTGTCACGATGCCGATTTTAAGTTTTACTGGAACGAGTGAAATATTAGACCGTCTAACACATATTGTCCAGGTCTATTGCGTACAAACACAAGCAATACAGCAGTATGCTTTAGACTTATCTCAGTGCTTACCCCCACCATTGGACAATGTGGTGTTAGAAAAGGCAGATTCTAATGTTTCACAAGATTCTGCTGGGGTTGAAGGACTGGCTGCCTTGTTTCCATCTGGGAGCAAGCCAACTGACACACCCTTCACTAGTTCCACACCCAGGGGTTCAGTGCTAGTCAATGGCTCTGAAAGTGCTACTGCAGAAAGATATCCTGCAAGCACCACTTCTCAGGATGCCGCATCCATTGCAAATACGGAATCTAAACCTGCTACACTGTCACCTGTAGCTAGTAACACAGACATTGTCTCTACTGCATCACCTCCTCTTCCTTTGAGCCCACGCTTGTCTAGAAATCTGTCTGGTTTTAGAAGTCCAGTGGTTTCCTTTGAGCCTATTACTGCAGTTAGTGATCATGCTGGTGACCGACGTGGTAATGACTTTTCAGTCAATCGACAAATGGATGCCATTCACACAAATTTGTCGGAAGTGTCTTCCCTGGATGATGAGTCCAGAATCATTGAGGAGAAAATTGCACGGGAAGATCTGTCTAATGTCCTAAATCCTCCGATTGTGTTTAAGCATCCAACTCATCTTATTACCCCCTCTGAGATACTGATGGCTGTTTCTTCCTCTGAAACAACGAATGTCACTGAAGGTAAGAGTGAGGGAGAGACAAATATCCAGGACGTAGTGGTTAACAATGACGTTGAAGATACAGAGATGGAGGTTAAAGAGGTAGAAATGAAGTCTCCTCAGAATGGTGAATATGGTCGTAGAGGTGAGCCTCAAAACCTTTCTCCGGAGAACAAGGAAAAAATTTTCTGCTCACAAGCTTCAGATCTTGGTATGGAAGTGGCTCGAGAGTGTAGTACACTATCATCTGAAACTTATATCATTGAGGAATCTCCACAAGTTGATGCTAATACAATAAACTCAGAGGAAGACTCCCAAACTGGTGAGGGTGATAGAACATCTGCCAAAGATGTGTCGGAAAAGGTTTCGGAATCATCTATATCAACAACTCTTCAAATTCCAACTCCTAATACAAAGGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCCTTAGGCTTGGTTTCCCAATCTTCCAGTGCTTTCAATTCTAATGAATCTTCCACTGAACCTTGCGGTAGTTCAAGCCTTCTTCCACCTGAAGCTGCTTTTCCTCCTTTACTGGCCATTCAAGATACGTTGAATCAGATAATGAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGACGACACTTGCAGTTCCAGTTACTAAAGAAGGTAAAAGGCTGGAGGCAGCTCTTGGACGGAGCATGGAAAAGGCCTTGAAAGCGAATGCTGATGCATTATTGGCCCGGATTCAGGAAGAGAGTGCTAAAAATGAGAAATTATTACGTGATAATACTCAAAAGATATCTAGTCTTGTTGCAAACTTTGTAAACAAGGACTTGCCTGCCTTTTTAGAGAAAGCTCTGAAGAAGGAAATGTCTACCATTGGACCTGCTGTGGCTCGCACAATAACACCAGCTATTGAGAAAACAATTTCTTCTGCCATCATTGATTCCTTCCAGAGAGGAGTAGGCGACAAGGCAGTAAGTCAACTAGAGAAAGCTGTCAACTCAAAGCTTGAAGCAACTGTTGCTAGGCAAATCCAAGCACAGTTTCAAACCTCCGGCAAGCAAGCTCTTCAGGATGCACTAAAATCTAGTTTCGAAGCATCAGTAATTCCTGCCTTTGAAATGTCGTGCAAAGCCATGTTTGAGCAAGTAGATTCTACCTTCCAGAAAGGACTGGTTGAACACTCAGCTGCAGCTCAGCAGCACTTCGACTCCTCACATTCTTCATTGGCACTTGCTTTGAGGGATGCAATAAATTCAGCATCGACAATGGCACAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTAGCAACTGCTGGAGCAAATGCTAGTTCAATGAATCCTTTGGTTACCCAACTAAGCAATGGACCATTGGGTGCTCTCCATGAGAAGGTTGAGGTTCCTTTGGATCCTACCAAAGAACTGTCGAGACTGTTATCTGAAAGGAAATATGAGGAAGCTTTCACCACTGCTTTACAGAGAAGTGATGTGAATATTGTCTCTTGGTTATGTTCTCAGGTTGACCTTAGGGCCATTCTGGCAAATCCCCTTGCTTTGAGTCAAGGAGTACTGCTGTCACTTCTGCAACAATTAGCCTGTGATATCAACAAGGATAGATCCCGGAAAATTGGATGGATGACAGACGTGGCTGCAGCCGTTAATCCCACAGATCCAATGATAGCAATGCACGTACGACCCATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGACCTTGTCAACGATCTCTCCCGTTGAGCTCACTGGCATTCGTATTATAATGCATGTTGTCAACTCCATGCTGGTAACTTGTAAATGA 4164 44.86 MASTGNPNPNPTNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSYPLQNAPFHHPYHSPHLPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNVGVPQNNPAQSSGARIMAMIRAPGSNLEQLPLPPAPLASMPSPSSGIPESSAPPNIPIMTTIPMIQGVNPGISPTGPVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEETKPQITGKEVLVVGFGKSVLRIDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNWEVKIWSSASEEGWLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYAIHLDYGLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGSESATAERYPASTTSQDAASIANTESKPATLSPVASNTDIVSTASPPLPLSPRLSRNLSGFRSPVVSFEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKIAREDLSNVLNPPIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTEMEVKEVEMKSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETYIIEESPQVDANTINSEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNSQALGLVSQSSSAFNSNESSTEPCGSSSLLPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQTTLAVPVTKEGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKISSLVANFVNKDLPAFLEKALKKEMSTIGPAVARTITPAIEKTISSAIIDSFQRGVGDKAVSQLEKAVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKGLVEHSAAAQQHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGANASSMNPLVTQLSNGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTTALQRSDVNIVSWLCSQVDLRAILANPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIAMHVRPIFEQVYQILNHQRTLSTISPVELTGIRIIMHVVNSMLVTCK 1387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6286278 6295112 - Cp4.1LG14g08000.1 Cpe14g00796 481180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 866 925 - -
Cpe14g00796 1387 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 408 IPR001680 GO:0005515
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 25 39 - -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 866 881 - -
Cpe14g00796 1387 Gene3D - 1298 1386 IPR044938 -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 933 951 - -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 607 662 - -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 1 83 - -
Cpe14g00796 1387 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 314 IPR001680 GO:0005515
Cpe14g00796 1387 SMART WD40_4 265 305 IPR001680 GO:0005515
Cpe14g00796 1387 SMART WD40_4 362 399 IPR001680 GO:0005515
Cpe14g00796 1387 SMART WD40_4 402 448 IPR001680 GO:0005515
Cpe14g00796 1387 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 14 324 - -
Cpe14g00796 1387 Gene3D - 240 535 IPR015943 GO:0005515
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 897 925 - -
Cpe14g00796 1387 SUPERFAMILY WD40 repeat-like 241 512 IPR036322 GO:0005515
Cpe14g00796 1387 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 14 324 IPR045152 GO:0031087
Cpe14g00796 1387 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 322 1387 - -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 882 896 - -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 812 835 - -
Cpe14g00796 1387 Coils Coil 1008 1035 - -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 933 952 - -
Cpe14g00796 1387 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 322 1387 IPR045152 GO:0031087
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 40 60 - -
Cpe14g00796 1387 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 224 311 IPR032401 -
Cpe14g00796 1387 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 357 512 IPR032401 -
Cpe14g00796 1387 MobiDBLite consensus disorder prediction 608 662 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00796 K12616 EDC4; enhancer of mRNA-decapping protein 4 - csv:101211283 2340.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00796 Cpe-Chr14:6286278 Cpe08g00823 Cpe-Chr8:6563163 1.88E-124 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00796 Cpe_Chr14 FPKM 1.020932 1.022769 1.770787 1.899506 5.149045 3.678443 4.376116 3.120643 2.442459 2.994102