Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00832 ATGGCGATGCGAGAGCTTGTTACTGGAGGAGCTGCTTGTGCTGTTCCTGGTGCTTCTTCTTCTTCTAACCCTCTCGGTGCCCTTGCCAACGCAATAATTGGCTCCTCATCCAAGACCCAGGAAAGGCTACGGGAAATTCCTACATCGCAGCTCACAGGTCCAGAAAGGCCGTTTGCCCCTGCGAGCCATGGGCAGCTCCCTGGCTCTGAATTTGATCACCCACCGCTTCATCCCAATGAGCAGGCGTCTAATTTTTTTAGCGGCTTCCACTCGGCTGCCGATCAGAGTGGTCTGGCCTCTGCATGGAATCAGGTTCAGGGCGGTCCTCCTCCTGTTCATTTGAGAGATATGCAACCAAATCTTGCTGAATTTGATCGAATTTATGACCAAATGCCTGCTTCTCAGGATCAACCCGTATTGGATGGGCCACCGCAAAGAATTCTGTCGAACTTTTTGCACTCATTTGTAGAGAGTAGCCGTGGTGGAATACCTTTTCATCCTACCTCTCTGCCTTTATTGGGACTATCTGAAGGTGATAAACAATGTATACGAGATCGTAGTAGCATAATGGCTCGACATTTTTTTGCAGATAAGAATGAAGACTTCATAAATGCACAGGTGAATGCACTTCTATCTTCCTTAGACATTGACAACAGTAGACAGGTTAGGGGGCCTCAGCCTGGTAGGTTTCATGAGTTGGAGGATTATTGGAATGAATCTCAAGCTCTCCAGAGACCTGGTGGTCACATTGCAGATGGATGGGCCTCTGAATATAGCCTAAACCGGGAAAAGTATGCTGATCATGAGGCTTGGGCTCAGTCTTTCGAACAACAACATGGTGCCAATGGATGGGCCTCTGAGTTTGAGAAGGAGAAGTTTCAGTTAGCATCGGCAGAAAAAATGGCAGGTGGTAATATGATGAACTTAGCTGCAATGGAGCAGACTCACAAGCTTGCAAAGACGTTAGCTGATAATAACGACCCTAAATTTCAGAACTCGAAGTTTCTTCAGTTTGTTTCAAAGATGAGTAGGGGTGAACTTATTATTGAAGATAATCAAGTCAAGCCAAACTCTTTATCTCCATCAGATAACTGGGCTTCCGAGTACCAGCAACAGTATAATGGAGGTCTTCCCTGGTCTGATGAATTTGTTTCTAATCAAACTAATCGGTGGGCTGATGAGTTTGCTGAAGAGAAGCAACATATGTCAGATGATCCATGGGTAAATGAATTTTCCAAGTTGCACATGCAAGACGACTGGGTGGAAGAATTTGGTCAGCAGGTTGGAGAAGGGGCTTCTGGAGAAGCCGATAATTGGGCAAATGCATATGATGAGTATCTAAATGAACAAGTAGCTGCCAAGGGAAAGACAGATGCTTCAAAGGGAATATACGTTTTTTCTGATATGAACCCATATGTTGGTCATCCTAATCCCTTGAAGGAAGGCCAGGATCTGTTCCATAAAGGCCTTCTGAGTGAGGCAGTGCTCGCTTTAGAGGCTGAAGTTATGAAAAACCCTGAAAATTCTGAAGGTTGGAGGCTTCTTGGAATTGCACATGCTGAAAATGATGATGATCAACAGGCTATTGCTGCCATGAAGCGGGCACTGGATGCTGACCCTACAAACTTAGAGGTGCTTCTTGCGCTTGGTGTGAGTCACACAAATGAATTAGAGCAAGCTGCTGCTTTAAGATACTTGTATGGGTGGTTACAGCATCACCCGAAGTATGGAATGCTTGCAAAACCGGAGCTTTCTGATTCGTTGTACTATGCAGATGTAGCTGGCTTATTTAACGAAGCTGCAAAAATGTTCCCTGATGATGCTGATGTGCACATAGTACTTGGTGTCCTTTATAATTTGTCCAGAGAATTTGACAAAGCAATTGCATCCTTTGAGACAGCCTTGAAACTAAAGCCGCAAGATTACTCTCTTTGGAACAAGCTAGGTGCTACGCAAGCTAACAGCATTCAAAGTGCTGATGCCATATTAGCTTATCAACAGGCACTTGATTTGAAGCCTAATTACGTTCGTGCCTGGGCCAATATGGGAATCAGTTATGCTAATCAGGGGCTCTATGAGGAATCGATTAAGTACTATGTAAGGTCACTTAGTATGAATCCAAAGGCAGACAATGCATGGCAATACTTAAGAATTTCACTAAGCTGTGCATCAAGGAATGACATGCTGGAAGCCTGTGATTCCCGCAATCTCGATGTTCTTCAGAAGGAGTTCCCATTATGA 2241 44.71 MAMRELVTGGAACAVPGASSSSNPLGALANAIIGSSSKTQERLREIPTSQLTGPERPFAPASHGQLPGSEFDHPPLHPNEQASNFFSGFHSAADQSGLASAWNQVQGGPPPVHLRDMQPNLAEFDRIYDQMPASQDQPVLDGPPQRILSNFLHSFVESSRGGIPFHPTSLPLLGLSEGDKQCIRDRSSIMARHFFADKNEDFINAQVNALLSSLDIDNSRQVRGPQPGRFHELEDYWNESQALQRPGGHIADGWASEYSLNREKYADHEAWAQSFEQQHGANGWASEFEKEKFQLASAEKMAGGNMMNLAAMEQTHKLAKTLADNNDPKFQNSKFLQFVSKMSRGELIIEDNQVKPNSLSPSDNWASEYQQQYNGGLPWSDEFVSNQTNRWADEFAEEKQHMSDDPWVNEFSKLHMQDDWVEEFGQQVGEGASGEADNWANAYDEYLNEQVAAKGKTDASKGIYVFSDMNPYVGHPNPLKEGQDLFHKGLLSEAVLALEAEVMKNPENSEGWRLLGIAHAENDDDQQAIAAMKRALDADPTNLEVLLALGVSHTNELEQAAALRYLYGWLQHHPKYGMLAKPELSDSLYYADVAGLFNEAAKMFPDDADVHIVLGVLYNLSREFDKAIASFETALKLKPQDYSLWNKLGATQANSIQSADAILAYQQALDLKPNYVRAWANMGISYANQGLYEESIKYYVRSLSMNPKADNAWQYLRISLSCASRNDMLEACDSRNLDVLQKEFPL 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6745583 6755948 - Cp4.1LG14g08380.1 Cpe14g00832 481216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00832 746 ProSiteProfiles TPR repeat profile. 509 542 IPR019734 GO:0005515
Cpe14g00832 746 SMART tpr_5 608 641 IPR019734 GO:0005515
Cpe14g00832 746 SMART tpr_5 676 709 IPR019734 GO:0005515
Cpe14g00832 746 SMART tpr_5 642 675 IPR019734 GO:0005515
Cpe14g00832 746 SMART tpr_5 509 542 IPR019734 GO:0005515
Cpe14g00832 746 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 746 IPR024111 -
Cpe14g00832 746 Pfam Tetratricopeptide repeat 677 708 IPR001440 GO:0005515
Cpe14g00832 746 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Cpe14g00832 746 PANTHER BNAC09G53570D PROTEIN 1 746 - -
Cpe14g00832 746 MobiDBLite consensus disorder prediction 48 84 - -
Cpe14g00832 746 ProSiteProfiles TPR repeat region circular profile. 676 708 - -
Cpe14g00832 746 Gene3D Tetratricopeptide repeat domain 458 746 IPR011990 GO:0005515
Cpe14g00832 746 ProSiteProfiles TPR repeat region circular profile. 608 641 - -
Cpe14g00832 746 Pfam Tetratricopeptide repeat 479 541 - -
Cpe14g00832 746 Pfam Tetratricopeptide repeat 594 641 - -
Cpe14g00832 746 ProSiteProfiles TPR repeat profile. 608 641 IPR019734 GO:0005515
Cpe14g00832 746 SUPERFAMILY TPR-like 461 746 IPR011990 GO:0005515
Cpe14g00832 746 ProSiteProfiles TPR repeat profile. 642 675 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00832 K13342 PEX5, PXR1; peroxin-5 - csv:101209718 1393.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00832 Cpe-Chr14:6745583 Cpe19g00484 Cpe-Chr19:4195859 7.55E-10 dispersed
Cpe14g00832 Cpe-Chr14:6745583 Cpe08g00799 Cpe-Chr8:6350624 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g800 . . . . Bpe09g00092 . . Bma13g01149 Cmo16g01055 . . . . . . . . . . . . . . . Cla10g00338 Cam10g0351 Cec10g0364 Cco10g0359 Clacu10g0352 Cmu10g1188 Cre10g0599 . . Cone14ag1279 Cone15ag1306 . Csa03g00358 . Cme06g02675 Blo07g00850 . Bda05g00656 Bda12g00995 . Bpe03g00732 . . Sed08g2850 . . . . . . Cpe14g00832 . Bhi11g00375 Tan01g1931 Cmetu06g1763 . Hepe06g1219 Mch10g1459 . . . . . . . . . . Chy06g01965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004195 3 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00832 Cpe_Chr14 FPKM 2.96127 3.568887 7.04423 7.174617 7.897697 6.774563 8.380076 12.100726 10.327327 11.541889