Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00835 ATGGCGTCTTCTTCAGGAAGCAGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAAGGTCGCTGACATTGTAGGCAACGAAGAAGCAGTTTCTCGGCTTCAAGTCATTGCTCGCGACGGCAACATGCCCAATTTCATATTATCTGGTCCGCCAGGAACTGGGAAGACAACCAGTATTCTGGCTCTTGCACACGAGCTCTTAGGACCAAATTACAAGGATGGTGTTCTGGAGCTTAATGCATCAGATGAAAGGGGAATCGACGTTGTGAGGAACAAAATTAAGATGTTTGCTCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACTCGTTTTGCACTTGCATGTAATACCTCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGGGCGCCTTATGGTGGTACTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACCGCTGATGGTGATATGAGGCAAGCGCTGAATAATTTGCAAGCTACATATAGTGGATTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGCGATCAACCGCATCCGCTGCATGTTAAGAACATGGTGCGTAACGTGCTTGAAGGTAAATTTGACGATGCTTGTGCAGCTCTGAAGCAACTCTACGACATGGGCTATTCTCCCACTGACATAATAACCACTCTTTTCCGTATTATTAAGAACTATGATATGGCTGAGTATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGGTCTTATCTGCAGCTATGCGGTCTTTTGGCCAAGCTTTCCATTGCTCGTGAGACTGCGAAAGCGCCATGA 1002 44.41 MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGKTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIARETAKAP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 6781291 6787758 + Cp4.1LG14g08300.1 Cpe14g00835 481219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00835 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
Cpe14g00835 333 Gene3D - 237 328 - -
Cpe14g00835 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 331 - -
Cpe14g00835 333 CDD HLD_clamp_RFC 172 234 - -
Cpe14g00835 333 Pfam ATPase family associated with various cellular activities (AAA) 52 169 IPR003959 GO:0005524|GO:0016887
Cpe14g00835 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
Cpe14g00835 333 CDD AAA 30 167 - -
Cpe14g00835 333 Gene3D - 173 236 - -
Cpe14g00835 333 SMART AAA_5 47 179 IPR003593 -
Cpe14g00835 333 Gene3D - 8 172 IPR027417 -
Cpe14g00835 333 PANTHER REPLICATION FACTOR C SUBUNIT 2 7 331 - -
Cpe14g00835 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00567 Cpe-Chr2:3386282 Cpe14g00835 Cpe-Chr14:6781291 1.41E-58 dispersed
Cpe05g00456 Cpe-Chr5:2642988 Cpe14g00835 Cpe-Chr14:6781291 2.21E-13 dispersed
Cpe14g00835 Cpe-Chr14:6781291 Cpe19g00815 Cpe-Chr19:6100226 4.52E-10 dispersed
Cpe14g00835 Cpe-Chr14:6781291 Cpe13g00630 Cpe-Chr13:6038030 4.07E-07 transposed
Cpe14g00835 Cpe-Chr14:6781291 Cpe01g02062 Cpe-Chr1:17463372 6.06E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00835 K10755 - csv:101208984 622.854