Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00878 ATGTTAGCTCCTCTGAATTGCCAACCTTCGCCTCAACTATCGACCATGCCGAATTCCCAATCCCAACCTGCTTCCCGCCATGTCGCGGTTATCGGAGCCGGCGCCGGCGGCATTGTCGTTGCCCGTGAGCTCAGCCGCGAGGGCCACCGTGTGGTCGTCTTCGAACGGAACAGTCAAATTGGAGGGACCTGGGTGTATTCTCCGGAAATTGAATCCGATCCACTTGGAGTCAACCCTGGTCGGACCCGAATCCATAGCAGCCTTTACAAATCTCTACGCACCAATCTCCCTAGAGAACTCATGGGCGTTCGGGATTACCCGTTTGTGCCACGAGAAGGGGAAGATCGAGATCCGAGGCGATTTCCAGGTCATCGAGAGGTTTTGAAGTATTTGGAAGATTTCGCTAATGAATTTGGGATCTGTGAATTAGTGAGATTTCGAACTGAGGTGGTTTTTGTTGGTTTGGAGCTTGGAAAATGGAGGATTCGATTTCGATGTGAAAATGGGGCTGTTCATGAAGAAACTTTTGATGCTGTAGTTGTTTGTGTTGGGAATTTTTCGCTGCCTCGAGTGGCAGAGATTCCTGGTATTGATGAATGGCCTGGTGAGCAGATACATAGTCACAATTATCGCAGTCCCGAACCATTTCGGGGTAAGGTTGTTGTCGTGATAGGTTATTCTTCAAGTGGTACGGACATTTCTCAGGAGCTCATTGGGGTTGCCAAAGAAATTCATATTGCTTGTAAATCAGCTAAAACAGAGCTTTTGGACACACAATCAAGTATTAATAGCGTGTCATTGCATCCAATGATCGAAAGTGTCCATAAAGATGGGAGAGTGGTCTTTCAAGACGGGTGCATCGTTTCGGTGGATGTTATTCTGCACTGCACTGGGTACAAGTATGATTACCCTTTCCTTGAAACCAATGGCATTGTTACTGTGAACGAGAACCGTGTAGGACCTCTATACAAGCATGTCTTCCCCCCAGCGTTGGCCCCGGGGCTTTCCTTTGCTGTTCCATTGCCCTTGTTTGAGCTTCAAGGCAATTGGGTTGCTGGTGTTTTATCAAACAGGATTGCACTTCCATCAAAAGAGGAGATGTTGGCCGATGTTAGAGCTTTCTACGCAGCTCTTGAAGCCTCTGGCAAGCCCAAGCATCTGACCCACGAATTGGGTGATTCTTTGCCTGCCTACATGAACTGGCTTGCAGCAACTTGTGGTCGTCCTGCCTATGAAGAATGGAGAAAAGAAATGTACATTGCTACTAACATTAATAGACTGGCCAATCTCGAGTCCTTCCGTGATGTTTGGCACGACGACGAGTTGAGTCGTCAAGCTTATGAGGAATTTAGTAAGTTTACTACAAATGAAAGAAGTCAAAACAACTCACATATGAATGTTTGA 1404 47.01 MLAPLNCQPSPQLSTMPNSQSQPASRHVAVIGAGAGGIVVARELSREGHRVVVFERNSQIGGTWVYSPEIESDPLGVNPGRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEDRDPRRFPGHREVLKYLEDFANEFGICELVRFRTEVVFVGLELGKWRIRFRCENGAVHEETFDAVVVCVGNFSLPRVAEIPGIDEWPGEQIHSHNYRSPEPFRGKVVVVIGYSSSGTDISQELIGVAKEIHIACKSAKTELLDTQSSINSVSLHPMIESVHKDGRVVFQDGCIVSVDVILHCTGYKYDYPFLETNGIVTVNENRVGPLYKHVFPPALAPGLSFAVPLPLFELQGNWVAGVLSNRIALPSKEEMLADVRAFYAALEASGKPKHLTHELGDSLPAYMNWLAATCGRPAYEEWRKEMYIATNINRLANLESFRDVWHDDELSRQAYEEFSKFTTNERSQNNSHMNV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7248094 7252649 - Cp4.1LG14g08820.1 Cpe14g00878 481262

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00878 467 MobiDBLite consensus disorder prediction 1 24 - -
Cpe14g00878 467 PANTHER DIMETHYLANILINE MONOOXYGENASE 21 454 - -
Cpe14g00878 467 Pfam Flavin-binding monooxygenase-like 26 250 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cpe14g00878 467 Pfam Flavin-binding monooxygenase-like 264 373 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cpe14g00878 467 Gene3D - 28 436 IPR036188 -
Cpe14g00878 467 PRINTS Flavin-containing monooxygenase (FMO) signature 50 74 IPR000960 GO:0050660|GO:0050661
Cpe14g00878 467 PRINTS Flavin-containing monooxygenase (FMO) signature 205 219 IPR000960 GO:0050660|GO:0050661
Cpe14g00878 467 PRINTS Flavin-containing monooxygenase (FMO) signature 232 247 IPR000960 GO:0050660|GO:0050661
Cpe14g00878 467 PRINTS Flavin-containing monooxygenase (FMO) signature 283 310 IPR000960 GO:0050660|GO:0050661
Cpe14g00878 467 PRINTS Flavin-containing monooxygenase (FMO) signature 26 42 IPR000960 GO:0050660|GO:0050661
Cpe14g00878 467 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 21 454 - -
Cpe14g00878 467 MobiDBLite consensus disorder prediction 7 24 - -
Cpe14g00878 467 Gene3D - 193 296 IPR036188 -
Cpe14g00878 467 SUPERFAMILY FAD/NAD(P)-binding domain 25 246 IPR036188 -
Cpe14g00878 467 SUPERFAMILY FAD/NAD(P)-binding domain 271 439 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00878 - - - csv:116401639 744.962
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01346 Cpe-Chr5:9459754 Cpe14g00878 Cpe-Chr14:7248094 2.01E-13 dispersed
Cpe14g00878 Cpe-Chr14:7248094 Cpe18g00289 Cpe-Chr18:4443200 1.35E-18 dispersed
Cpe02g01043 Cpe-Chr2:9627570 Cpe14g00878 Cpe-Chr14:7248094 7.06E-94 transposed
Cpe14g00878 Cpe-Chr14:7248094 Cpe08g00751 Cpe-Chr8:6050729 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g505 . . . . . Bpe07g00163 . . . Cmo16g01109 . . . . . Cpe14g00878 . . . . . . . . . . . . . . . . . . . . . . Cme06g02609 . . . . . . . Bma12g00154 . . . . Cma16g01059 Car06g00685 . . . . . . . . . . . . . . . . . . . Chy06g02022 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00878 Cpe_Chr14 FPKM 6.01706 5.695355 0.0 0.0 0.238161 0.148461 0.225029 0.0 0.0 0.0