Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00895 ATGCAGAAGTTGCAGAGAGTTCATTTGGAGCTGAAAAGCGGCGATTCGAGAAACGATGCGCTACGAGCTATGGTTTGCACTGCTAGTGATTTACAGGGGTGGAAGGATTTTCCTAAGGGCCTTAGAGTTCTTCTCCTTGATGGAGATAGCAGTTCTTCAGCTGAGATAAGAACAAAGCTTGAGGAAATGGAGTATGTTGTTGTGACTTACTGCAATGAGAATGATGCATTGTCAGCCATTTCGAGCAAACCCGATACCTTTCATGTCGCCATTGTGGAGGTAACGACGAGCAGTCACGATGGGAATTTTAAGTTTCTTGAAGCTGCTAAGGACTTGCCTACCATTATGATTTCGAATATCCATTGCCTAAGCACGATGATGAAGTGCATAGCGCTCGGTGCAATCGAGTTCCTTCAGAAACCGCTCTCGGAGGACAAACTGAGGAATATTTGGCAACATGTTGTTCATAAGGCGTTCAATGCAGGCGGTAGCGCCATCCCCAGTTCTTTAAAACCTATCAAAGAATCTGTTGCCTCCATTCTGCATCTAGAATCAGAAAACAGTGAAAACGATAATCCAGTCCCGAAAGAGTTGGAAATATCGAACGTTGATGATGACAATGATCGTGAACTACTAGAAGGAAGTGATAAGTATCCAGCTCCTTCAACTCCTCAGCAGAAGCACGGAATGCGGCTGGTGGACGATGGCGACTGCCAGGATCAATTGAACTGTTTGCTCGAAAAAGAGTGCGGGGAGCAAGACGGGGAATCCAAATCTGTCGAAACTACTTGTATCAATTCGCTTGGTGAAGGCATTTCCCAAGTGGAGAACACTCAGTTACTTGACAAAGAAGGAATAAAAGAGGAAGAGAACTCTGCTGATGGCTGTGGGGCTGCGAGTAACGACGATCACGAGATACATGATCAAGACATCATTAGCAGTTCCGAAGAAAACAAGAGCAAAGCATGTGGTCTCGGTAATTCGAGTGGGACGAAAGTTAGTAGGAAGAAGCTGAAGGTAGACTGGACGCCCGAACTGCACCGAAAGTTCGTACAGGCAGTGGAACAACTCGGAGTGAATCAAGCAATTCCTTCTCGAATTCTCGAGCTGATGAAAGTTGAAGGCTTGACAAGGCATAATGTAGCAAGTCATCTTCAGAAGTATCGGATGCACAAGAGACATATCTTGCCAAAACAAGACGACTCGAGTTGGTCTCATTCAAAGGATCCAATGAGGAAGAATTCCTATTCACAGAGACCTGTGATGGCCTTCCCTCCTCCTTATCATTCAAATCATGTAATGCCAGTGGCTCCGATCTACCCGCCGTGGGGTCATATGGCATGCCCCTCGCCCAGTGTCCAAATGTGGGTGTCGCCCGGTTATCCGTCCTGGCAACCACAAGAAATTTGGCCATGGAAGTCATATCCTGGGATGTATGCTGATGCATGGGGTTGCCCTGTGACACCACCTACTCATAGCCCTCTCCCTTCTCATCTTCCTCAACAGCCTATTTTCAGATTTGAAAATGCCGACGCACACGATAAAAGCTATGGCATTGCGTTCAATCCAATCGAACTTCAACTGGCTGATGAAGAAATTGACAAAGTGGTGAGAGAGGCAATCAGATAA 1629 46.29 MQKLQRVHLELKSGDSRNDALRAMVCTASDLQGWKDFPKGLRVLLLDGDSSSSAEIRTKLEEMEYVVVTYCNENDALSAISSKPDTFHVAIVEVTTSSHDGNFKFLEAAKDLPTIMISNIHCLSTMMKCIALGAIEFLQKPLSEDKLRNIWQHVVHKAFNAGGSAIPSSLKPIKESVASILHLESENSENDNPVPKELEISNVDDDNDRELLEGSDKYPAPSTPQQKHGMRLVDDGDCQDQLNCLLEKECGEQDGESKSVETTCINSLGEGISQVENTQLLDKEGIKEEENSADGCGAASNDDHEIHDQDIISSSEENKSKACGLGNSSGTKVSRKKLKVDWTPELHRKFVQAVEQLGVNQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPKQDDSSWSHSKDPMRKNSYSQRPVMAFPPPYHSNHVMPVAPIYPPWGHMACPSPSVQMWVSPGYPSWQPQEIWPWKSYPGMYADAWGCPVTPPTHSPLPSHLPQQPIFRFENADAHDKSYGIAFNPIELQLADEEIDKVVREAIR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7508889 7513282 + Cp4.1LG14g08960.1 Cpe14g00895 481279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00895 542 MobiDBLite consensus disorder prediction 189 215 - -
Cpe14g00895 542 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR2 24 541 - -
Cpe14g00895 542 PANTHER TRANSCRIPTION ACTIVATOR GLK1 24 541 IPR044825 GO:0003700|GO:0045893
Cpe14g00895 542 SUPERFAMILY Homeodomain-like 335 394 IPR009057 -
Cpe14g00895 542 ProSiteProfiles Response regulatory domain profile. 42 155 IPR001789 GO:0000160
Cpe14g00895 542 SUPERFAMILY CheY-like 39 157 IPR011006 -
Cpe14g00895 542 Pfam Myb-like DNA-binding domain 340 389 IPR001005 -
Cpe14g00895 542 MobiDBLite consensus disorder prediction 396 417 - -
Cpe14g00895 542 Gene3D - 41 161 - -
Cpe14g00895 542 Gene3D - 333 395 - -
Cpe14g00895 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 334 393 IPR017930 -
Cpe14g00895 542 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 337 392 IPR006447 GO:0003677
Cpe14g00895 542 MobiDBLite consensus disorder prediction 185 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00895 - - - cmax:111500281 1034.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00201 Cpe14g00895 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00895 Cpe-Chr14:7508889 Cpe15g00340 Cpe-Chr15:4608853 1.15E-146 dispersed
Cpe14g00895 Cpe-Chr14:7508889 Cpe05g00201 Cpe-Chr5:1083919 7.93E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g607 . Blo03g00110 . . . Bpe07g00227 . . . Cmo16g01131 . . . . . Cpe14g00895 Cpe05g00201 . . . . . . . Cla10g00185 Cam10g0191 Cec10g0196 Cco10g0198 Clacu10g0195 Cmu10g1040 Cre10g0445 . . . . . . . . . . . . . . . Bma12g00227 . . . . Cma16g01084 . . . . . . . . . . . . . . . . . . . . Chy06g02116 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001240 1 4 1 2 1 2 1 2 2 2 2 2 8 2 2 8 2 2 5 2 3 2 2 2 2 2 2 2 6 1 77
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50549 PF00249 Myb_DNA-binding 5.90E-09 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00895 Cpe_Chr14 FPKM 15.123693 18.45713 33.189327 36.27803 76.21048 71.632294 77.536964 38.481754 32.746998 35.40966