Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00900 ATGTTTTTAAGGAAAGGAGAAGTAAGAGATTCAGAAGGTTTGTTGCTGTTGATGCGAAGATTCAACGTCGTCGTTTTGACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCATCGACTGCAATCATGGTGGAATCGGTGGAGTTACCGAGTCGACTCGGAATTCTTCCCTTCAGAAACAAGGTTCTGTTACCAGGCGCCATTATTCGGATTCGATGCACTTCTTCCAGCAGTGTGAAACTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGATTGATTGTTCGAGATGATGCTGACGCCTCAGCGATAGGTCCTGTGTTATCTCAAGATGGGAAAAATCATCAGGAAGTTATTCAATGGCATTCAAGGGGTGTTGCCGCTCGTGCCTTGCAACTTTCTAGAGGAGTGGAGAAACCGAGTGGAAGAGTGACATATACAGTTGTGCTAGAAGGTTTATGTAGATTTACTGTCCAGGAACTTAGCACCAGGGGAACATATTATACTGCACGAATATCACATTCAGAAATGACAAAGGAAGAGATGGAGCAAGTGGAGCAAGACCCTGAATTTGTTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCGGTTCTTGAACAGAAACAAAAAACTGGAGGAAGGATTAAGGTTCTTTTGGAGACAGTTCCAGTTCATAAACTGGCTGATATATTTGTCGCCAGCTTTGAGATGAGTTTTGAAGAGCAATTATCTATGCTGGATTCAGTTGACTTAAGAGTAAGGCTTTCAAAAGCAATGGAGTTATCAATACGTGTAGCTGAGAAGATTACGCAAAAAGTAGAAGGACAGTTGTCAAAATCACAGAAAGAATTCCTTTTGCGCCAGCAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGATCACGATGAAGATGATTTGGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCCAATATCTGGAAGCATGCCCAGAGGGAGCTGAGGAGCCTTAAAAAGATGCAACCTCAACAACCGGGATATAACAGCTTGCGAGTTTACCTTGAGCTTCTTGCTGACCTTCCATGGAAAAAGGCTACTGAAGAACATGAATTAGACTTGAAAGCTGCCAAGGAACGTCTTGATAGTGACCACTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCTGTGCTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGACATTAGAGGACATAGGAGGACCTACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAACCCAGTCATGCTATTAGATGAGATTGACAAGACAGGCTCTGATGTGCGAGGCGATCCAGCTTCAGCTCTACTGGAGGTTCTTGACCCTGAACAGAACAAGAAGTTCAATGATCATTATTTGAATGTCCCATTTGACCTTTCAAATGTCGTATTTGTGGCCACTGCTAACAGAATGCAGCCCATACCTCCTCCTCTTTTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGCACCATTTGATTCCTCGAGTTTTGGAACAACATGGACTAAGCGCTGAATTTCTTCAAATTCCAGAGGCTATGGTTAAACTTGTTATTCAAAGATACACTAGAGAGGCTGGTGTACGAAACCTTGAAAGAAATTTGGCTGCCTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACTGCCCCGTTGAATAAAGATGTGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCTGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATCGGAGCGGATCATGAGATGCCAAACCCATTGAGGATGGCCTCTCCATTGGTTGTTGATGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGGTTTGACGACAGAGAAGCAGCCGAGCGGGTTATATCACCTGGGATATCGGTTGGATTGGTTTGGACTGCCTTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGTAATGTCTGGAAAGGGAGAATTACATCTCACTGGCCAGCTCGGTGACGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTACGAGCGAGGGCAACAGATCTGAAACTGGCAGCAGCTTGTGAATCTAATCTTTTGGAGGGTCGTGATATTCATATACATTTTCCCGCTGGTGCGGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCTCTGGTCTCACTGTTTGGTAAGAAAAGAGTTAGGGCTGATACTGCAATGACAGGAGAGATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGACAAGAGGGTTATTCTCCCAGAGAGAAATTTGAAAGATTTAGCGGAAGTTCCTTCAGCCGTGCTTGCTAGTTTGGAGATATTACTAGCTAAGCGGATGGAAGACGTCCTGGAACAGGCTTTTGAAGGTGGGTGTCCATGGAGGCTACACCCCAAGTTATGA 2670 45.39 MFLRKGEVRDSEGLLLLMRRFNVVVLTSLSLSLSLSLSLSSSSTAIMVESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIVRDDADASAIGPVLSQDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISHSEMTKEEMEQVEQDPEFVSLSRQFKATAMELISVLEQKQKTGGRIKVLLETVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDHDEDDLVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEEHELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFNDHYLNVPFDLSNVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMHHLIPRVLEQHGLSAEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVVERDQTAPLNKDVHQVSSPLLENRLSDGAEVDMEVIPIGADHEMPNPLRMASPLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAFGGEVQFVEATVMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGKKRVRADTAMTGEMTLRGLVLPVGGIKDKRVILPERNLKDLAEVPSAVLASLEILLAKRMEDVLEQAFEGGCPWRLHPKL 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7546584 7556633 - Cp4.1LG14g09060.1 Cpe14g00900 481284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00900 889 PIRSF Lon_proteas 45 652 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cpe14g00900 889 PIRSF Lon_proteas 671 880 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cpe14g00900 889 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 707 723 - -
Cpe14g00900 889 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 421 440 - -
Cpe14g00900 889 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 819 838 - -
Cpe14g00900 889 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 789 808 - -
Cpe14g00900 889 SUPERFAMILY Ribosomal protein S5 domain 2-like 707 876 IPR020568 -
Cpe14g00900 889 Gene3D - 557 695 - -
Cpe14g00900 889 Pfam Lon protease (S16) C-terminal proteolytic domain 681 878 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cpe14g00900 889 SMART AAA_5 413 558 IPR003593 -
Cpe14g00900 889 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 49 889 IPR027501 GO:0004252|GO:0006515
Cpe14g00900 889 Gene3D - 378 556 IPR027417 -
Cpe14g00900 889 Gene3D - 183 310 - -
Cpe14g00900 889 SUPERFAMILY PUA domain-like 57 269 IPR015947 -
Cpe14g00900 889 Gene3D - 45 179 IPR046336 -
Cpe14g00900 889 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 792 800 IPR008268 GO:0004176|GO:0004252|GO:0006508
Cpe14g00900 889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 631 IPR027417 -
Cpe14g00900 889 CDD AAA 398 559 - -
Cpe14g00900 889 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 47 889 - -
Cpe14g00900 889 Pfam ATPase family associated with various cellular activities (AAA) 417 554 IPR003959 GO:0005524|GO:0016887
Cpe14g00900 889 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 47 889 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cpe14g00900 889 Pfam ATP-dependent protease La (LON) substrate-binding domain 59 270 IPR003111 -
Cpe14g00900 889 Gene3D - 706 880 IPR014721 -
Cpe14g00900 889 SMART lon_5 56 273 IPR003111 -
Cpe14g00900 889 TIGRFAM lon: endopeptidase La 59 877 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cpe14g00900 889 ProSiteProfiles Lon proteolytic domain profile. 704 879 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cpe14g00900 889 Gene3D - 317 365 - -
Cpe14g00900 889 ProSiteProfiles Lon N-terminal domain profile. 57 273 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00900 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1528.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00866 Cpe-Chr7:7812902 Cpe14g00900 Cpe-Chr14:7546584 5.40E-148 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00900 Cpe_Chr14 FPKM 7.580065 6.92661 6.940369 7.979452 9.015823 8.642709 8.388899 13.693291 15.390985 13.081718