Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00944 ATGGCTTCCCCTGTTTTTCTCTTCCTACTCTGTTTTCTCCTTTCCTCCCCTGTTTTCTCCTCACAGCTTCTTCTTTTACCTCTGTCTAATTCCTTATCATCCTCTTCTGATTTCAACAACACCCACAACCTCCTTAAATCCACCGCCGCCCGCTCTTCCGCCCGCTTCCACCACCGCCGTCGTACCCACCACCGCAGCCACCTCTCTCTGCCCCTTTCCCCCGGTGGCGATTATACTCTCTCCTTCAACCTTGGTTCCGAGTCTCAAAAGATTTCCCTCTATATGGACACTGGAAGCGACCTTGTCTGGTTCCCCTGTTCCCCATTTGAGTGTATTCTCTGTGAAGGCAAACCCAAAATTCAATCCCCTTTGCCCAAAATCGCAGATAAAAAATCAGTTTCCTGCAGCGCCGCCGCATGCTCCGCCGCCCACGGGGGCTCCCTCTCCGCCTCCCACCTCTGTGCAATTTCCCGATGTCCACTTGAATCCATTGAAGTTTCTGAGTGTTCTTCTTTTTCTTGTCCGCCGTTTTATTATGCTTATGGCGATGGGAGTTTAATTGGTCGGCTTTATAGAGACAGTCTCAGTTTGCCCGCGCCGGCGCCGGCACCGTCACCGGCGATTAATGTTCGGAATTTTACTTTTGGGTGTGCCCACTCAGCGTTAGGCGAGCCAATCGGTGTCGCCGGATTCGGCCGAGGGTTGTTGTCGATGCCGAGTCAACTCGCTACTTTCTCGCCTCAACTCGGGAACCGGTTTTCTTATTGTTTGGTTTCTCACTCGTTTGCGGCGGACCGAGTTCGCCGCCCGAGTCCGCTGATTCTCGGCCGGTACTACGGCAGCGAGACGGAGTTTATTTACACTTCCTTGCTTGAGAATCCAAAGCATCCTTATTTTTACTCGGTTGGGTTGGCCGGGATTTCAGTTGGGTCGGTGAGGATTCCGGCGCCGGAGTTTTTGAAAAGGGTGGATGAGGGTGGCAGCGGCGGCGTTGTGGTGGATTCCGGTACTACTTTTACTATGTTGCCAGCAGGTTTGTATAACTCGGTGGTAGCCCAGTTTGAGAACCGGACCGGGCGAGTTGCAAGCCGGGCGAGTCGGATTGAAGAAAACACCGGATTGAGCCCTTGCTATTACTACGAGAACTCAGTGGAAGTGCCACGTGTCGTGTTACATTTCGTTGGGGAGAAATCCAGTGTGGTGCTTCCTAGAAAGAATTATTTCTACGAGTTTTTGGACGGTGGAGATGGGGTGGAGAGAAAGAGAAAAGTCGGGTGTTTGATGCTGATGAACGGTGGGGATGAGGCTGAACTGGCAGGTGGGCCCGGTGCCACGCTTGGGAACTACCAACAACAGGGTTTTGAGGTGGCATATGATTTGGAAAACAATCGGGTCGGGTTCGCCCGGCGACAGTGTTCAACCCTTTGGGACAGCTTGAACCGCAGTTAA 1449 52.66 MASPVFLFLLCFLLSSPVFSSQLLLLPLSNSLSSSSDFNNTHNLLKSTAARSSARFHHRRRTHHRSHLSLPLSPGGDYTLSFNLGSESQKISLYMDTGSDLVWFPCSPFECILCEGKPKIQSPLPKIADKKSVSCSAAACSAAHGGSLSASHLCAISRCPLESIEVSECSSFSCPPFYYAYGDGSLIGRLYRDSLSLPAPAPAPSPAINVRNFTFGCAHSALGEPIGVAGFGRGLLSMPSQLATFSPQLGNRFSYCLVSHSFAADRVRRPSPLILGRYYGSETEFIYTSLLENPKHPYFYSVGLAGISVGSVRIPAPEFLKRVDEGGSGGVVVDSGTTFTMLPAGLYNSVVAQFENRTGRVASRASRIEENTGLSPCYYYENSVEVPRVVLHFVGEKSSVVLPRKNYFYEFLDGGDGVERKRKVGCLMLMNGGDEAELAGGPGATLGNYQQQGFEVAYDLENNRVGFARRQCSTLWDSLNRS 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 7966429 7967877 + Cp4.1LG14g09420.1 Cpe14g00944 481328

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00944 482 Pfam Xylanase inhibitor C-terminal 300 468 IPR032799 -
Cpe14g00944 482 SUPERFAMILY Acid proteases 73 477 IPR021109 -
Cpe14g00944 482 Gene3D Acid Proteases 276 478 IPR021109 -
Cpe14g00944 482 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 331 342 IPR001969 GO:0004190|GO:0006508
Cpe14g00944 482 PANTHER BNAA01G17170D PROTEIN 1 477 - -
Cpe14g00944 482 CDD pepsin_A_like_plant 78 472 IPR034161 -
Cpe14g00944 482 PANTHER OS07G0603500 PROTEIN-RELATED 1 477 - -
Cpe14g00944 482 Pfam Xylanase inhibitor N-terminal 78 260 IPR032861 -
Cpe14g00944 482 Gene3D Acid Proteases 68 275 IPR021109 -
Cpe14g00944 482 ProSiteProfiles Peptidase family A1 domain profile. 78 468 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00944 - - - cmos:111431201 822.387
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00313 Cpe-Chr10:1816909 Cpe14g00944 Cpe-Chr14:7966429 9.89E-45 dispersed
Cpe14g00944 Cpe-Chr14:7966429 Cpe20g00599 Cpe-Chr20:3669937 7.32E-63 dispersed
Cpe14g00944 Cpe-Chr14:7966429 Cpe08g00979 Cpe-Chr8:7654763 1.92E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010679 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00944 Cpe_Chr14 FPKM 14.638999 14.662519 15.537116 14.848107 24.514448 23.543398 26.209492 26.720375 25.103014 23.785313