Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00951 ATGGGTTGCACGGTGAGAGATAAGCATGTTCGTACGAATCGGAGGCCTCGATCGGTAAAACCCGAATTCGATCCGTGTTGTCACCAAGAACGAGCTTCACTTCCTAAATCTGTACTTGAATCGGGTTCCAAGCCGTTGGATTATCATATAGGGCTTGACGATTCGAACCAGGATAACGCTGTTACCTCAAACTGTAATTCCGGTTCCAGCTTGGATGATCTTGGATGGGGTTACTGTACGGAGGAGCAATTGGAGGAAATTTTGATGAAGAATTTGCATTTTGTTTATACTGAAGCTGTTTCTAAGCTTGTTGCATTGGGAGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTCGGTCGGGCAAGCACCATGGAAATTCCGGTGCTTCCTTCAGCACCAAGTAATGCTAATGGGTCAGCGTCTGGTGCCAATGGTGAGAATGTTAGTAACCAACCAGTGGGATTTTTGGAACCATCCCTTTGTAAATTTCATGGTGGTTCAGGTTTTGGAAACAGTGGAGGTTCTGAATTCTCTGCTAATGGTTTTCTGTCTTATCCTCCTGAAATGGATTTGCATAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTTCTCCTTCGATGAAGTCGTTGTTGAAGAGGAATGTGGCTGCATTTGCTGCTGGTTTTCGAGCAAACTCGAAACACCTTACAGCACAGGCTCCAGCTTGTGCAACTGTCTTGCCAAGTGAAATTCCCCCTGTCGTGCAAGGTGCTTCGGTAGTTCCAGTGGAGAAAATTGAGGAGTCCCCGATTCCAAAGAACCAAGATGCTGTAAATTCAATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTGGCAGACGATAAAAAGGATGAAGTGATTGTAAATCTCTTGCATCAGATTAAAGAGCTCGAGAGACAAGTGAAGGAGCGGAAAGATTGGGCGCATCAAAAGGCAATGCAAGCCGCTAGGAAACTGAGTCATGATCTCACGGAGCTTAAAACGTTGAGGATGGAAAGGGAAGAGACCCAACGCCTGAAAAATAGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGAGATGGAGAATGCGTTGAGAAAGGCCAGTGGTCAGGTGGACCGTGCAAATTCGACAGTACGACGACTTGAGACAGAAAATGCAGAAATTAGAGCAGAGATGGAAGCTTTAAAGTTAAGTGCCTCCGAGTCTGTCACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAAAGCTTAAAGAGACTATTGGCCTGGGAAAAGCAAAAAACAAAATTACAGGAGCAGATTGTAGAGGAGAAGGATAAGATTTCAAGGTTGCAAGATGAAATGGAGATGATCAAGGTAGCTCAAAAAGAGGCTGAGGCTAGGTGGAGGCAGGAGTTGAATGCTAAGGAAGCTGCCATGACACAAGTGGAAGACGAAAGACTTCGTAAAGAAGCAGCGGAGGCGAGTAGTAAAAGAAAGCTCGAGGCATTACGACTTAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCAAAGGCTCGAACAAGAACTTTTGCGTCTAAAGGCATCTGCACAATCTATTGACTCACACCAACCCTCCAATAACACACCTAGAGGGAATTCCGAGGGCGTAAAACCCCAGGGAGAAACGATTGCGAAAATGCTTCGGGAATTAGATAGCTATGAGGAATCAACAGAGGAAGACGTCAACCACGACCGCGAATGCATGATATGTATGAGAGGTGAGGTCTCCATTGTTTTCTTACCTTGCGCTCACCAAGTTCTGTGTGCGAGTTGCAGTGATAGTTACGGGAAAAGGAGTAAAGCAGCATGCCCGTGTTGTCGGGTTCCGATAGAACAGAGAATCCGTGTTTTTGGTGCGAGTTCATAG 1929 44.84 MGCTVRDKHVRTNRRPRSVKPEFDPCCHQERASLPKSVLESGSKPLDYHIGLDDSNQDNAVTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLHFVYTEAVSKLVALGDAMWCLLMSDLHVGRASTMEIPVLPSAPSNANGSASGANGENVSNQPVGFLEPSLCKFHGGSGFGNSGGSEFSANGFLSYPPEMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRANSKHLTAQAPACATVLPSEIPPVVQGASVVPVEKIEESPIPKNQDAVNSMLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRMEREETQRLKNSKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEALKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIVEEKDKISRLQDEMEMIKVAQKEAEARWRQELNAKEAAMTQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQRLEQELLRLKASAQSIDSHQPSNNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEDVNHDRECMICMRGEVSIVFLPCAHQVLCASCSDSYGKRSKAACPCCRVPIEQRIRVFGASS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8023025 8026950 - Cp4.1LG14g09520.1 Cpe14g00951 481335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00951 642 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 107 641 - -
Cpe14g00951 642 Pfam Zinc finger, C3HC4 type (RING finger) 585 633 - -
Cpe14g00951 642 MobiDBLite consensus disorder prediction 537 560 - -
Cpe14g00951 642 SUPERFAMILY RING/U-box 579 634 - -
Cpe14g00951 642 Coils Coil 418 500 - -
Cpe14g00951 642 Coils Coil 368 409 - -
Cpe14g00951 642 ProSiteProfiles Zinc finger RING-type profile. 588 628 IPR001841 -
Cpe14g00951 642 PANTHER OS05G0141500 PROTEIN 107 641 IPR046934 -
Cpe14g00951 642 MobiDBLite consensus disorder prediction 537 556 - -
Cpe14g00951 642 PANTHER OS05G0141500 PROTEIN 1 107 IPR046934 -
Cpe14g00951 642 Coils Coil 509 543 - -
Cpe14g00951 642 MobiDBLite consensus disorder prediction 1 22 - -
Cpe14g00951 642 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 107 - -
Cpe14g00951 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 639 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00951 - - - csv:101203508 872.848
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00228 Cpe-Chr8:1514081 Cpe14g00951 Cpe-Chr14:8023025 1.77E-79 dispersed
Cpe14g00951 Cpe-Chr14:8023025 Cpe18g00744 Cpe-Chr18:7220515 1.94E-09 dispersed
Cpe14g00951 Cpe-Chr14:8023025 Cpe03g01402 Cpe-Chr3:11305170 2.55E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005960 1 2 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00951 Cpe_Chr14 FPKM 67.745575 75.721146 0.502068 0.0 0.318484 0.31061 0.427653 0.138878 0.0 0.048434