Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00960 ATGACGGATTATCGATTGTCGACGATGAATCTTTGGACCGACGAGAACGCGTCGTTGATGGACGCTTTCATGAACTCCGATCTCTCCTCTTACTGGGCTCCATCGGCGGCGTCGTCTCATTCTCTCCACAACCAACCGCCGCCGCAGTCCTCCGCCTCAACTTCCACTCCGCCGCCGGATCCCCCTAAATCCGTCGCCGTTTTCAATCAGGAGACTCTGCAGCAGCGTCTCCAGGCGCTGATCGACGGCGCTAGGGAGAGCTGGACTTACGCGATTTTCTGGCAGTCGTCGTACGATTACCCCGACGGGTCGGTTTTGGGGTGGGGAGATGGGTATTACAAAGGGGAGGAGGATAAAGGGAAGGGGAAGGCGAAAGTAGTGACGTCGGCGGCTGAACAAGCTCACCGGAAGAAGGTTCTCCGGGACCTTAACTCTTTGATTTCTGGATCCGCCGCCGGACCGGACGATGCGGTGGATGAGGAGGTTACGGATACGGAGTGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGTTTTTTAACTCGACGCCGATTTGGATCTCCGGCGCTGATGGGTTGTCGGCGTCGGCTTGTGAACGGGCAAGACAGGGGAAGGTTTTTGGGTTACAGACGATGGTTTGTATTCCTTCTCCAAACGGCGTTGTCGAAATGGGTTCGACGGAATTGATTCACCGGACGTCCGATTTGATGAACAAAGTCAAGATTCTGTTCAATTTCAACAATCTTGAAACGAGTTCTTGGATATCGGGAACCACCGCCGCTGCTTCCACTGCCGACGAAGGGGAAAACGACCCGTCCTCGATGTGGATTAGTGAGCCGTCGAGTACAATCGCCACCACCGTCCCTTCCGGCGACGTTCCGAGGAAGCTAACCCAATCGGAAAATCAAAAACAGAGCCAAAGCTTCTTAAACTTCTCCGACTACGGATTCGAATCAAATCCATCAAAGAGCATCACCACCGACACAACCACCACCACTACCACCACCAACACCCCGTCATTCAAGCCGGAATCCGGCGGGATGCTGAACTTCGGCAACGGAAGTCTCTTTTCCAGCCACTCACAGTACATAACAGACGAACAGAACGAAAAAAAGAGATCCCCTCCTTCTAGAAGTAGCAACGACGAAGGGATCCTCTCGTTCACCTCCGGCGTGATCTTACCCTCCTCCGGGAAAGTAAAATCCGGCGACTCCGACCACTCAGATCTGGAAGCTTCCGTGATCAGAGAAGTCGATAGCTGTACAAAATCCATAGAACCCGAAAAACGACCTAGAAAACGAGGCAGAAAACCAGCAAACGGAAGAGAAGAGCCATTGAATCACGTCGAAGCAGAGAGACAACGACGAGAGAAATTAAACCAGAAATTCTACGCTCTCCGAGCCGTAGTTCCAAACGTATCTAAAATGGACAAGGCCTCTCTACTCGGCGACGCAGTTTCATACATCAACGAGCTCAAATCGAAGCTCCAAATCATAGAAACAGAGAAAACAGAGATGGGAAAACATCTAGAGTTCATCAAGAAGGAGATGGGAGGGAAAGATCTAGGGCATTACACAAACACAATCGATCAAGATCTAAAAACAGGGAACAGAAAAGTAATGGAAATAGAGATCGAGGTTAAAATCATGGGATGGGACGCAATGATACGGATTCAAAGCAGTAAAAAGAATCATCCGGCGGCGAGATTGATGACGGCGTTGAAGGATTTGGATTTGGAAATGCTTCATGCGAGTGTGTCTGTAGTGAATGATCTGATGATTCAACAGGCGACGGTGAAGATGGGGAGCAGATGTTACACGCAGGAGCAGCTGAAAATGGCTCTGATCGCCCGGGTCGGCGGCGGCGGCGGCGGCGGCGGAATGATGTAG 1917 51.17 MTDYRLSTMNLWTDENASLMDAFMNSDLSSYWAPSAASSHSLHNQPPPQSSASTSTPPPDPPKSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYPDGSVLGWGDGYYKGEEDKGKGKAKVVTSAAEQAHRKKVLRDLNSLISGSAAGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFNSTPIWISGADGLSASACERARQGKVFGLQTMVCIPSPNGVVEMGSTELIHRTSDLMNKVKILFNFNNLETSSWISGTTAAASTADEGENDPSSMWISEPSSTIATTVPSGDVPRKLTQSENQKQSQSFLNFSDYGFESNPSKSITTDTTTTTTTTNTPSFKPESGGMLNFGNGSLFSSHSQYITDEQNEKKRSPPSRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCTKSIEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKLQIIETEKTEMGKHLEFIKKEMGGKDLGHYTNTIDQDLKTGNRKVMEIEIEVKIMGWDAMIRIQSSKKNHPAARLMTALKDLDLEMLHASVSVVNDLMIQQATVKMGSRCYTQEQLKMALIARVGGGGGGGGMM 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8090753 8092669 - Cp4.1LG14g09600.1 Cpe14g00960 481344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00960 638 MobiDBLite consensus disorder prediction 329 394 - -
Cpe14g00960 638 MobiDBLite consensus disorder prediction 292 315 - -
Cpe14g00960 638 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 455 520 IPR036638 GO:0046983
Cpe14g00960 638 Pfam Helix-loop-helix DNA-binding domain 456 501 IPR011598 GO:0046983
Cpe14g00960 638 MobiDBLite consensus disorder prediction 427 462 - -
Cpe14g00960 638 MobiDBLite consensus disorder prediction 37 63 - -
Cpe14g00960 638 PANTHER MYC 11 628 IPR045084 GO:0003700|GO:0006355
Cpe14g00960 638 SMART finulus 458 507 IPR011598 GO:0046983
Cpe14g00960 638 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cpe14g00960 638 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 452 501 IPR011598 GO:0046983
Cpe14g00960 638 MobiDBLite consensus disorder prediction 329 353 - -
Cpe14g00960 638 Gene3D - 451 528 IPR036638 GO:0046983
Cpe14g00960 638 CDD bHLH_AtAIB_like 449 525 - -
Cpe14g00960 638 PANTHER TRANSCRIPTION FACTOR MYC2 11 628 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe14g00960 Cpe15g00214 CCT
Cpe05g00176 Cpe14g00960 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00916 Cpe-Chr8:7224831 Cpe14g00960 Cpe-Chr14:8090753 3.95E-21 dispersed
Cpe12g00368 Cpe-Chr12:2613869 Cpe14g00960 Cpe-Chr14:8090753 6.12E-22 dispersed
Cpe14g00960 Cpe-Chr14:8090753 Cpe15g00064 Cpe-Chr15:445225 1.95E-14 dispersed
Cpe05g00016 Cpe-Chr5:64191 Cpe14g00960 Cpe-Chr14:8090753 1.12E-14 transposed
Cpe14g00960 Cpe-Chr14:8090753 Cpe15g00214 Cpe-Chr15:1833374 0 wgd
Cpe14g00960 Cpe-Chr14:8090753 Cpe05g00176 Cpe-Chr5:929089 0 wgd
Cpe14g00960 Cpe-Chr14:8090753 Cpe08g00859 Cpe-Chr8:6788078 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50557 PF14215 bHLH-MYC_N 3.10E-52 CL0161 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00960 K13422 - csv:101205372 1046.96