Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00961 ATGGCCTCCGACACCTTCTCCGACAAGAACGTCGTCTTCAGGAAGCTCAAATCCAAGTCCGAAAACAAGACGTGTTTTGATTGCAATGCTAAGAATCCGACTTGGGCTTCTGTTCCCTATGGGATCTTCCTCTGTATTGATTGCTCCGCTGTGCATCGCAGCCTTGGCGTCCATGTTAGCTTCGTCAGGTCCACAAATTTAGACTCTTGGACTGTGGAGCAGCTTAAAACAATGAGCTTTGGAGGAAATAACCGAGCACAGGTTTTCTTTAAGCAGCATGGATGGTCCGACGGAGGCAAAATCGAGGCCAAATATACATCAAGAGCTGCTGAATTGTATAAACAATTACTTTCAAAAGAAGTTGCTAAAAGTATGGCAGAAGAGATGGCGTTGCCATCTTCCCCAGTTTCTTCTCTGTCAGGCCAAGTAACAAATGGACCTCCTGATGTTAAGACTAATGAAGTTGCTAAAGACAATGTCTCTGGAAAGCAAGAAGCTCCCGAAAGTTCTGCCTCGCCAAAAGCTTCTCAGACGGTATTCTCAAGTACTGTGAAGAAGCCCATTGGTGGGAAGAAGCCAGGGAAAACTGGGGGACTTGGTGCCCGAAAGCTCACTACCAAGCGAAGTGAAAATTTATATGATCAGAAACCTGAAGAACCCACAGTTCCAGTTTCATCTTCAACTGCGATCAAAACTCCTGCAACTGGTTCATCTATTGAAGAAAGCGATGAAGCGAGGAAGAAGTTCTCCAATGCCAAATCTATTTCGTCAGCTCAATATTTTGGTGATCAGAACAGAGCTGATGCTGAAGCTCAGGCCTCCCTGCAAAAGTTCTCGGGTTCGGCTTCCATCTCTAGTGCCGATCTATTCGGTCACCAACAAGATAATCTTTCCGCTGATCTTACTGCAACCGAGTTTATTAACCGGATTTCTATTCAGGCACAGCAGGATCTTTCTTCTCTCAAGAACATAGCTGGAGAAACAGGGAAGAAGCTAAGCTCTTTGGCATCCACATTAATTACAGATCTTCAGGACAGAATCATCTGA 1047 45.08 MASDTFSDKNVVFRKLKSKSENKTCFDCNAKNPTWASVPYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTVEQLKTMSFGGNNRAQVFFKQHGWSDGGKIEAKYTSRAAELYKQLLSKEVAKSMAEEMALPSSPVSSLSGQVTNGPPDVKTNEVAKDNVSGKQEAPESSASPKASQTVFSSTVKKPIGGKKPGKTGGLGARKLTTKRSENLYDQKPEEPTVPVSSSTAIKTPATGSSIEESDEARKKFSNAKSISSAQYFGDQNRADAEAQASLQKFSGSASISSADLFGHQQDNLSADLTATEFINRISIQAQQDLSSLKNIAGETGKKLSSLASTLITDLQDRII 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8099649 8104386 + Cp4.1LG14g09590.1 Cpe14g00961 481345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00961 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 238 348 - -
Cpe14g00961 348 SUPERFAMILY ArfGap/RecO-like zinc finger 12 125 IPR037278 -
Cpe14g00961 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 238 348 - -
Cpe14g00961 348 MobiDBLite consensus disorder prediction 157 184 - -
Cpe14g00961 348 Gene3D Arf GTPase activating protein 1 137 IPR038508 -
Cpe14g00961 348 MobiDBLite consensus disorder prediction 132 149 - -
Cpe14g00961 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 238 - -
Cpe14g00961 348 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 238 - -
Cpe14g00961 348 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Cpe14g00961 348 CDD ArfGap_ArfGap2_3_like 8 123 - -
Cpe14g00961 348 MobiDBLite consensus disorder prediction 132 243 - -
Cpe14g00961 348 MobiDBLite consensus disorder prediction 220 239 - -
Cpe14g00961 348 Pfam Putative GTPase activating protein for Arf 12 114 IPR001164 GO:0005096
Cpe14g00961 348 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Cpe14g00961 348 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Cpe14g00961 348 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Cpe14g00961 348 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00961 K12493 ARFGAP2_3; ADP-ribosylation factor GTPase-activating protein 2/3 K11855 csv:101205608 558.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe14g00961 Cpe15g00213 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00961 Cpe-Chr14:8099649 Cpe20g00174 Cpe-Chr20:992807 2.50E-22 dispersed
Cpe14g00961 Cpe-Chr14:8099649 Cpe15g00213 Cpe-Chr15:1823879 4.43E-138 wgd
Cpe14g00961 Cpe-Chr14:8099649 Cpe08g00860 Cpe-Chr8:6793374 6.70E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g672 Blo02g00992 . . Bda08g00628 Bpe05g00530 . . . Cmo06g00656 Cmo16g01209 . . . . Sed02g0115 Cpe14g00961 . Bhi11g00157 Tan01g2189 Cmetu06g2430 . . Mch10g1655 . Cla10g00158 Cam10g0158 Cec10g0168 Cco10g0167 Clacu10g0160 Cmu10g1009 Cre10g0419 Cone8ag0472 Cone12ag0466 . . Lsi07g01197 . Chy04g00094 Cme06g02472 . . . . . . Bma05g00713 . Sed01g4109 . Cmo19g00250 Cma06g00647 Cma16g01158 Car06g00578 Car16g01098 . Cpe15g00213 Bhi05g00496 Tan07g1980 . . . . . Cla09g01127 Cam09g1182 Cec09g1193 Cco09g1214 . . Cre09g1144 . Csa03g04608 Chy06g02144 Cme04g00118
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001954 2 2 2 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 3 2 1 2 4 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00961 Cpe_Chr14 FPKM 10.137579 11.216406 17.29204 17.387917 7.993766 6.931853 9.359763 31.180387 33.210152 37.280155