Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00981 ATGTGGTTTCGATACATTGAGGGGGGCTTGGACCCTACTGTGGAGGGAAAAATTTGTAAATCGAGAGAGGATAGAAATGGGCTAGCTCTTCTGAAGCTCAAGAGGCTTCAGGCTACAAATTCTGAAACTGCCAACAAAACTTCAGCTGTCAAGAATATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGTCTCATCTCCTTGTGGTGTGAGATTACTGAGTGGCAATGTAGAAACCTTTTCTCGTTCAAGTGGCATGTCAAATGAGAGGGATGTCTTTTCTAAAAGGAGAGTAGACAAGTTTGAGTACGATGATTTAGAGTGGACCGAAAAGATCCCGGAATGCCCTGTATATTCTCCCTCAAAGGAGGAATTTGAGGATCCTTTGGTCTATTTGCAAAAGATAGCTCCTGAAGCCTCAAAATACGGCATATGCAAGATTATCTCCCCACTGATTGCTTCTGTTCCTGCTGGTGCTGTATTAAGTAAGGAGAAACCAGGTTTCAAGTTTACAACGAGAGTGCAACCTTTTCGCTTTGCTGAATGGGATACTGACGATCAGGTTACCTTTTACATGAGTGGAAGGAACTATTCATTTCGCGATTTTGAAAAATTTGCGAACAAGATATATGCCCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATATGGAAAAGGAATTTTGGCGTGAAATTTCTTGTGGAAGGACGGAAAGTGTAGAATATGCTTGCGATGTTGAGGGTAGTGCCTTTTCATCTTCTCCATCTGATGAGCTTGGGACAAGTAAATGGAATTTGAAGAATCTTTCTCGGCTGCCCAAGTCCATACTGCGCCTGCTGGAAAATCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGTATGTTTGCGTGGCATGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGAGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTTGTCAGGGAGCATGTATACACCCAGGATATCTTATCAACTGTTGGAGAGGATGGAGCATTTGACGTACTTCTGGGGAAAACAACGTTGTTTCCGCCCAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTCCAGAAACCTGGGGAGTTTGTAATCACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCCCTGGGTGCTGTTGCCAGCCAGCGGTATGCACTCCTGAACAGGATGCCTCTACTTCCTCATGAAGAGCTTCTATGTAAAGAATCAATGCTTCTCTATACAAATTCAGAACTTGTAGACCCACATTATGCTTCTGCAGAGTCAACCTCTCATTATTCTATCAAGACTTCTTTTGTGAGTATGATTCGCTTCCAGGATCGCGCTCGGTGGTCTTTGATGAAATCAAGAACATGCACTGGTGTTTCACCAAATTTTCATGGAACCATTATTTGCAGCTTGTGCAAACGTGACTGCTATATTTCTTATATCAACTGCAATTGTTATGGACATCCAGTGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCGTGTGGTAGCAACCGTACACTCTTCTTGTGTGAGGATATTTTAGAAATGGAATCTGCAGCTCAGAAATTTGAGCAGGAGTGTGGAACATTGGATGAGATTAGGGGGCAAGCTTATAATGGTGAAGAATTATATTCTTATCCTCTGTTAAATTTATTTAAACGAGCTGTTGTGGACGGATACACTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTTACTGCTGCTGCTATCTGTCGCTTGGGAGAAAATGAGTGTGTTTCCAGTAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAACCATCAGATCCATCTCTCTCTTTTGAAGCGTCAACTTTTTGTTCAGTTGTAGACTATAACGAAACCTTGCGCACCACTAGCCATGTACAAAAAAATTCAAGTTTTGAACAGTCTTCTGAAGTTTCGAACAGGGCACTTGAATCATCACGCAACCATTGCTCAAGTAAATCTCCAGGCAGTGTACGTGTATCAGAGCTAACGACTGTTGTAGATCGAGAAAGTGATGATTCTGATACAGAAATTTTTAGGGTCAAGCGTCGCCCTCTGAAGCTGGATAAAAAAACCGGGAGCGATGCCACATCTTTAAAGCATTTTGCTAGCCAGGATGGCCGCAAAAGATTGAAGAGACTCCAAACAAATGGGAATTCCGAGGGAGTAACGCCATCGTATGGTCGTGGAACTGACAACTCGCGTTATAAATTATCCCCTTCCAGTACTTACAAGGACTCTGCAGTAAGTGATGCAATTGACAAGTATAGCAGAGGGAGTACTATTCCCACCTCTACTATGTGCCAGAGATTCAGCAATGAGAAACTAAGTGGTAATAGACAGCGCGTCTATGAACTCAACAATCGCAGGAGGGAAAGGTTTCAGCATGAGATGGGAAAGCCCAAAAGGGTACTACATCCACATCCCTCTATGGAGACTGGGCCAAAGCGTGTCAAAATTAGAGGCCCAACACTCGGTCGGCCCGATTGA 2649 42.88 MWFRYIEGGLDPTVEGKICKSREDRNGLALLKLKRLQATNSETANKTSAVKNMMNRSGGDALRVSSPCGVRLLSGNVETFSRSSGMSNERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKEEFEDPLVYLQKIAPEASKYGICKIISPLIASVPAGAVLSKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYSFRDFEKFANKIYARRYSSSGCLPASYMEKEFWREISCGRTESVEYACDVEGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTQDILSTVGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLLPHEELLCKESMLLYTNSELVDPHYASAESTSHYSIKTSFVSMIRFQDRARWSLMKSRTCTGVSPNFHGTIICSLCKRDCYISYINCNCYGHPVCLRHDIKSLNFSCGSNRTLFLCEDILEMESAAQKFEQECGTLDEIRGQAYNGEELYSYPLLNLFKRAVVDGYTPYCKIEVQLNSEFTAAAICRLGENECVSSSQPTQSCITENHRPEPSDPSLSFEASTFCSVVDYNETLRTTSHVQKNSSFEQSSEVSNRALESSRNHCSSKSPGSVRVSELTTVVDRESDDSDTEIFRVKRRPLKLDKKTGSDATSLKHFASQDGRKRLKRLQTNGNSEGVTPSYGRGTDNSRYKLSPSSTYKDSAVSDAIDKYSRGSTIPTSTMCQRFSNEKLSGNRQRVYELNNRRRERFQHEMGKPKRVLHPHPSMETGPKRVKIRGPTLGRPD 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8287107 8295178 + Cp4.1LG14g09750.1 Cpe14g00981 481365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00981 882 SMART JmjN_1 114 157 IPR003349 -
Cpe14g00981 882 ProSiteProfiles JmjC domain profile. 262 432 IPR003347 -
Cpe14g00981 882 MobiDBLite consensus disorder prediction 743 768 - -
Cpe14g00981 882 SUPERFAMILY Clavaminate synthase-like 228 447 - -
Cpe14g00981 882 ProSiteProfiles JmjN domain profile. 115 156 IPR003349 -
Cpe14g00981 882 Gene3D Cupin 115 478 - -
Cpe14g00981 882 MobiDBLite consensus disorder prediction 743 796 - -
Cpe14g00981 882 SMART cupin_9 262 432 IPR003347 -
Cpe14g00981 882 Pfam jmjN domain 116 148 IPR003349 -
Cpe14g00981 882 MobiDBLite consensus disorder prediction 769 796 - -
Cpe14g00981 882 MobiDBLite consensus disorder prediction 680 711 - -
Cpe14g00981 882 MobiDBLite consensus disorder prediction 855 882 - -
Cpe14g00981 882 Pfam JmjC domain, hydroxylase 292 415 IPR003347 -
Cpe14g00981 882 PANTHER LYSINE-SPECIFIC DEMETHYLASE 42 877 - -
Cpe14g00981 882 Pfam C5HC2 zinc finger 512 563 IPR004198 -
Cpe14g00981 882 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 42 877 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00981 - - - cmax:111465200 1726.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00989 Cpe-Chr9:8747642 Cpe14g00981 Cpe-Chr14:8287107 8.95E-78 dispersed
Cpe14g00981 Cpe-Chr14:8287107 Cpe20g00334 Cpe-Chr20:1874271 7.99E-78 dispersed
Cpe16g00179 Cpe-Chr16:3994798 Cpe14g00981 Cpe-Chr14:8287107 2.30E-167 transposed
Cpe14g00981 Cpe-Chr14:8287107 Cpe15g00192 Cpe-Chr15:1589472 0 wgd
Cpe14g00981 Cpe-Chr14:8287107 Cpe05g00162 Cpe-Chr5:866596 5.55E-07 wgd
Cpe14g00981 Cpe-Chr14:8287107 Cpe08g00874 Cpe-Chr8:6892198 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50560 PF02373 JmjC 1.30E-39 CL0029 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00981 Cpe_Chr14 FPKM 2.010606 2.801283 2.148994 2.732021 4.68084 4.705647 5.61503 1.712867 1.360448 1.646769