Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00991 ATGGCCGCTTTGCAGTACCTCGATTCTCTTCGCAACTCGCATCCTGAGCTCGCTGAATGGTACAATTCGCTAGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTTAAGCTTGAGCAGTTCGTCGCTCTCACGGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATCGAGAAACTGAGGAGTACTAAAGAGCACCGCATAGAGGAGCCTATCCTTTATATTAAAATGCAAATAGCTATTTTTAAGCTCGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACTCTTGACAGCATGACTGACATTGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTATAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTCGCATATACTTCAGTGGAATCACTCTCAGACTCATTTAAATTGGATTTGACCTTTGATTTGTCTCTTTCTGCACTTTTGGGAGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATTTTTGAGTGCAAATACGACGATCTTCGTACTTATAACATGATTAACAATGGCTGCAACAATTGCCGGCCATCTGAAGATCGAACGATCCCATTGAAGGTTATAGCAGAACGAACAAAACTCTCTATTGAGGATGTGGAGCATCTACTAATGAAGAGCCTGTCTGTCCACCTTATAGAGGGTATCATCGATCAAGTCGAGGGAACGGTCCATGTTTCCTGGGTGCAACCAAGGGTACTAGGCATTCCACAGATCAAATCCCTGCGAGACCGACTGGACAGTTGGGTGGATAAAGTTCATTCAACTTTGCTTTCAGTCGAGGCCGAGACGCCTGATCTAGTTGCATCGTAA 1026 42.79 MAALQYLDSLRNSHPELAEWYNSLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLTFDLSLSALLGDNIYNFGELLAHPIFECKYDDLRTYNMINNGCNNCRPSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWVDKVHSTLLSVEAETPDLVAS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8363067 8367392 - Cp4.1LG14g09970.1 Cpe14g00991 481375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00991 341 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 247 340 IPR035298 -
Cpe14g00991 341 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 228 IPR035298 -
Cpe14g00991 341 SMART PINT_4 225 320 IPR000717 -
Cpe14g00991 341 Pfam PCI domain 253 298 IPR000717 -
Cpe14g00991 341 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 225 320 - -
Cpe14g00991 341 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B 247 340 - -
Cpe14g00991 341 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B 1 228 - -
Cpe14g00991 341 SUPERFAMILY Winged helix DNA-binding domain 254 303 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00991 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 578.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00991 Cpe-Chr14:8363067 Cpe13g00979 Cpe-Chr13:8109688 8.68E-06 dispersed
Cpe14g00991 Cpe-Chr14:8363067 Cpe08g00887 Cpe-Chr8:6998010 8.30E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g757 . . . . . Bpe07g00240 . . . Cmo16g01244 . . . . . Cpe14g00991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma12g00241 . . . . Cma16g01197 . Car16g01127 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00991 Cpe_Chr14 FPKM 13.430107 17.926308 17.042023 17.470137 11.912502 12.880239 12.594178 25.442192 25.356125 24.274323