Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00997 ATGATTCCATTCGGGCCTCTCGTTTGGAGGAAAGAACATCAATCATCAATATTCTCTCTCTCTTGTTTTTCTTTTTCACTTCGAAGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAGAAATGTATTTCTCCAACGCGAATTTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATTTTGCGTGTTTCAGGATGTCTCACCGGAAAATTCATCGGAGTTTACTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTGATGGCGAAGGAGGAATCGAAATGACTGGGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGAGCCACTGAAAGCCACCAGGACCAGAGTGTTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTCTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGATCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGCTTGGGATCAACTTTTAAAACGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTGCATCAGCAGCAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGA 1050 42.57 MIPFGPLVWRKEHQSSIFSLSCFSFSLRSVLHSSGKASDRGEMYFSNANFVSSSTIPAAVLPLPSRNFACFRMSHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEGGIEMTGSMQLIRQFCDCFIEPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELDRIRSGCILLSSFLLSNEEWAWDQLLKRCYPGPWKVLRKVRNKFVCVHQQQDMPSLKEVALNILPSS 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8406792 8412855 + Cp4.1LG14g09890.1 Cpe14g00997 481381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00997 349 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1 96 288 - -
Cpe14g00997 349 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1 307 348 - -
Cpe14g00997 349 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC 307 348 IPR044687 -
Cpe14g00997 349 PANTHER PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC 96 288 IPR044687 -
Cpe14g00997 349 Pfam Domain of unknown function (DUF1995) 119 342 IPR018962 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00997 - - - bhj:120069467 506.908
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g812 . . Bda06g01232 . . . . . . . . . . . . Cpe14g00997 . . . . . . . . . . . . . . . Cone8ag0544 . . . . . . . . . . . . . . Bma12g00249 . . . . . . Car16g01135 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002951 2 0 2 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 2 1 2 2 2 1 2 4 4 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g00997 Cpe_Chr14 FPKM 27.380753 29.683559 29.00396 27.866875 37.749889 37.803432 37.345867 23.956184 20.281586 21.534235