Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe14g01003 | ATGGTAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGCAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTGAAATTGGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTAGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAACTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGATTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCCCAATCCTCTATGGGGGCTTCATCCGGCAACGGAATAGTTGGTAATGTGAATGTATCTGCTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATCTCATTTTAACACCCCTAATTCTGGAACAAGGTTTAACGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCAGATATTCCCAGGCCACCTCTAAATGCTTCTCATGCCCCTCCTCAGCCTATACATCAGCAGCCACCTTCAATGTACAGTAACAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCAATACGGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAAAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGATAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGTGACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGTACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGCAGGACAGATGCCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACTGCATTTCAAGAAGGCGGCGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAAAAGTTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTGAAATCAACTGTCATGAAAGCAGAAAGCATTAACTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAGCTCAGGGCAGGGAACACCATACAAAATCCTGGAGTTTTTCGCCCCGGATCGGAGAATATAGGGGGTGGACAGTTCGTGTCGCCCATTCGAAATAGTACCAATAATGTTGGCAGAGAATATGGTACATCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTCTAGGCCTATTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATCGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCGCCATCCGTCGGAGGAGGGATATACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGGTAGGGATTGCCCTGGTTTGGCTACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTGA | 2499 | 44.46 | MVASMAPFKLTEGAVMVICKRESSAETFQPVVQVIDLKLVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSMGASSGNGIVGNVNVSAASFEQPKVNQSQVPHVGSHFNTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRPPLNASHAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYGGEIRATCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATVGRTDARKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQRVKSTVMKAESINFSTESRFLLDLMEKLRAGNTIQNPGVFRPGSENIGGGQFVSPIRNSTNNVGREYGTSNRGVQYGDHHNSSRPIPSTLHNSRTYCNSCGGSGHSSMNCPSIISSPAPSVGGGIYLNRVSGSSGRDSGECFKCHQTGHWGRDCPGLATFPPAYGNSGFTAR | 832 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 8460607 | 8463788 | - | Cp4.1LG14g10080.1 | Cpe14g01003 | 481387 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe14g01003 | 832 | Pfam | Zinc knuckle | 800 | 815 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe14g01003 | 832 | Gene3D | - | 358 | 496 | IPR012340 | - | |
Cpe14g01003 | 832 | SUPERFAMILY | Nucleic acid-binding proteins | 511 | 688 | IPR012340 | - | |
Cpe14g01003 | 832 | ProSiteProfiles | Zinc finger CCHC-type profile. | 801 | 815 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe14g01003 | 832 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 223 | 687 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cpe14g01003 | 832 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 6 | 721 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cpe14g01003 | 832 | MobiDBLite | consensus disorder prediction | 160 | 243 | - | - | |
Cpe14g01003 | 832 | Gene3D | - | 245 | 354 | IPR012340 | - | |
Cpe14g01003 | 832 | MobiDBLite | consensus disorder prediction | 160 | 199 | - | - | |
Cpe14g01003 | 832 | Pfam | OB-fold nucleic acid binding domain | 259 | 340 | IPR004365 | GO:0003676 | |
Cpe14g01003 | 832 | Gene3D | - | 8 | 123 | IPR012340 | - | |
Cpe14g01003 | 832 | Pfam | Replication factor-A C terminal domain | 530 | 681 | IPR013955 | - | |
Cpe14g01003 | 832 | Pfam | Replication protein A OB domain | 369 | 472 | IPR031657 | - | |
Cpe14g01003 | 832 | Gene3D | - | 752 | 819 | - | - | |
Cpe14g01003 | 832 | SMART | c2hcfinal6 | 756 | 772 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe14g01003 | 832 | SMART | c2hcfinal6 | 800 | 816 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe14g01003 | 832 | CDD | RPA1_DBD_A | 248 | 351 | - | - | |
Cpe14g01003 | 832 | SUPERFAMILY | Retrovirus zinc finger-like domains | 787 | 819 | IPR036875 | GO:0003676|GO:0008270 | |
Cpe14g01003 | 832 | SUPERFAMILY | Nucleic acid-binding proteins | 364 | 492 | IPR012340 | - | |
Cpe14g01003 | 832 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 111 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cpe14g01003 | 832 | ProSiteProfiles | Zinc finger CCHC-type profile. | 757 | 772 | IPR001878 | GO:0003676|GO:0008270 | |
Cpe14g01003 | 832 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
Cpe14g01003 | 832 | SUPERFAMILY | Nucleic acid-binding proteins | 245 | 358 | IPR012340 | - | |
Cpe14g01003 | 832 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 6 | 721 | - | - | |
Cpe14g01003 | 832 | CDD | RPA1_DBD_C | 514 | 687 | IPR013955 | - | |
Cpe14g01003 | 832 | Gene3D | - | 497 | 688 | IPR012340 | - | |
Cpe14g01003 | 832 | CDD | RPA1_DBD_B | 380 | 487 | - | - | |
Cpe14g01003 | 832 | CDD | RPA1N | 13 | 110 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g01184 | Cpe-Chr11:9703803 | Cpe14g01003 | Cpe-Chr14:8460607 | 1.28E-68 | dispersed | |
Cpe11g01188 | Cpe-Chr11:9720977 | Cpe14g01003 | Cpe-Chr14:8460607 | 0 | dispersed | |
Cpe14g01003 | Cpe-Chr14:8460607 | Cpe08g00899 | Cpe-Chr8:7098340 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe14g01003 | K07466 | - | csv:101211358 | 1429.85 |