Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g01003 ATGGTAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGCAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTGAAATTGGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTAGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAACTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGATTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCCCAATCCTCTATGGGGGCTTCATCCGGCAACGGAATAGTTGGTAATGTGAATGTATCTGCTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATCTCATTTTAACACCCCTAATTCTGGAACAAGGTTTAACGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCAGATATTCCCAGGCCACCTCTAAATGCTTCTCATGCCCCTCCTCAGCCTATACATCAGCAGCCACCTTCAATGTACAGTAACAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCAATACGGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAAAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGATAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGTGACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGTACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGCAGGACAGATGCCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACTGCATTTCAAGAAGGCGGCGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAAAAGTTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTGAAATCAACTGTCATGAAAGCAGAAAGCATTAACTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAGCTCAGGGCAGGGAACACCATACAAAATCCTGGAGTTTTTCGCCCCGGATCGGAGAATATAGGGGGTGGACAGTTCGTGTCGCCCATTCGAAATAGTACCAATAATGTTGGCAGAGAATATGGTACATCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTCTAGGCCTATTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATCGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCGCCATCCGTCGGAGGAGGGATATACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGGTAGGGATTGCCCTGGTTTGGCTACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTGA 2499 44.46 MVASMAPFKLTEGAVMVICKRESSAETFQPVVQVIDLKLVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSMGASSGNGIVGNVNVSAASFEQPKVNQSQVPHVGSHFNTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRPPLNASHAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYGGEIRATCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATVGRTDARKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQRVKSTVMKAESINFSTESRFLLDLMEKLRAGNTIQNPGVFRPGSENIGGGQFVSPIRNSTNNVGREYGTSNRGVQYGDHHNSSRPIPSTLHNSRTYCNSCGGSGHSSMNCPSIISSPAPSVGGGIYLNRVSGSSGRDSGECFKCHQTGHWGRDCPGLATFPPAYGNSGFTAR 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8460607 8463788 - Cp4.1LG14g10080.1 Cpe14g01003 481387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g01003 832 Pfam Zinc knuckle 800 815 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 Gene3D - 358 496 IPR012340 -
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 511 688 IPR012340 -
Cpe14g01003 832 ProSiteProfiles Zinc finger CCHC-type profile. 801 815 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 223 687 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe14g01003 832 PANTHER REPLICATION FACTOR A 1, RFA1 6 721 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe14g01003 832 MobiDBLite consensus disorder prediction 160 243 - -
Cpe14g01003 832 Gene3D - 245 354 IPR012340 -
Cpe14g01003 832 MobiDBLite consensus disorder prediction 160 199 - -
Cpe14g01003 832 Pfam OB-fold nucleic acid binding domain 259 340 IPR004365 GO:0003676
Cpe14g01003 832 Gene3D - 8 123 IPR012340 -
Cpe14g01003 832 Pfam Replication factor-A C terminal domain 530 681 IPR013955 -
Cpe14g01003 832 Pfam Replication protein A OB domain 369 472 IPR031657 -
Cpe14g01003 832 Gene3D - 752 819 - -
Cpe14g01003 832 SMART c2hcfinal6 756 772 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 SMART c2hcfinal6 800 816 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 CDD RPA1_DBD_A 248 351 - -
Cpe14g01003 832 SUPERFAMILY Retrovirus zinc finger-like domains 787 819 IPR036875 GO:0003676|GO:0008270
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 364 492 IPR012340 -
Cpe14g01003 832 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe14g01003 832 ProSiteProfiles Zinc finger CCHC-type profile. 757 772 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 245 358 IPR012340 -
Cpe14g01003 832 PANTHER REPLICATION PROTEIN A SUBUNIT 6 721 - -
Cpe14g01003 832 CDD RPA1_DBD_C 514 687 IPR013955 -
Cpe14g01003 832 Gene3D - 497 688 IPR012340 -
Cpe14g01003 832 CDD RPA1_DBD_B 380 487 - -
Cpe14g01003 832 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g01003 K07466 RFA1, RPA1, rpa; replication factor A1 - csv:101211358 1429.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01184 Cpe-Chr11:9703803 Cpe14g01003 Cpe-Chr14:8460607 1.28E-68 dispersed
Cpe11g01188 Cpe-Chr11:9720977 Cpe14g01003 Cpe-Chr14:8460607 0 dispersed
Cpe14g01003 Cpe-Chr14:8460607 Cpe08g00899 Cpe-Chr8:7098340 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g886 . . . . . Bpe07g00251 . . Cmo06g00609 Cmo16g01260 . . . . . Cpe14g01003 . . . . . . . . Cla10g00108 Cam10g0103 Cec10g0110 Cco10g0112 Clacu10g0107 Cmu10g0955 Cre10g0366 . . . . Lsi07g01137 . . Cme06g02413 . . . . . . . Bma12g00253 . . . Cma06g00602 Cma16g01216 Car06g00537 Car16g01142 . . . . . . . . . . . . . . . . . Csa03g00107 Chy06g02198 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe06g01023 . 106 786 Core DNA Replication Machinery Family AT4G14700 65.0 4.4e-259 891.3
Cpe06g01023 . 73 786 Core DNA Replication Machinery Family AT4G12620 65.7 1.7e-271 932.6
Cpe07g00469 . 1 276 Core DNA Replication Machinery Family AT2G37560 68.1 2.7e-109 392.5
Cpe01g01014 . 9 410 Core DNA Replication Machinery Family AT2G01120 65.8 3.4e-154 542.0
Cpe12g00375 . 3 536 Core DNA Replication Machinery Family AT4G29910 56.9 1.6e-167 586.6
Cpe11g00701 . 1 226 Core DNA Replication Machinery Family AT1G26840 73.0 1.5e-89 326.6
Cpe08g00047 . 962 1793 Core DNA Replication Machinery Family AT1G79150 58.4 2.9e-242 835.5
Cpe15g00894 . 1 368 Core DNA Replication Machinery Family AT1G79150 52.6 2.1e-102 370.9
Cpe03g00916 . 9 939 Core DNA Replication Machinery Family AT1G44900 75.2 0.0e+00 1335.9
Cpe08g00006 . 1 966 Core DNA Replication Machinery Family AT1G44900 73.4 0.0e+00 1331.6
Cpe19g01129 CCT 65 636 Core DNA Replication Machinery Family AT5G46280 81.5 2.1e-268 921.8
Cpe04g00111 CST 1 845 Core DNA Replication Machinery Family AT2G16440 74.9 0.0e+00 1179.5
Cpe15g00556 CST 1 845 Core DNA Replication Machinery Family AT2G16440 76.9 0.0e+00 1159.4
Cpe07g01135 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1114.0
Cpe19g01218 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1170.6
Cpe17g00747 . 11 722 Core DNA Replication Machinery Family AT4G02060 85.7 0.0e+00 1218.0
Cpe12g00890 . 8 678 Core DNA Replication Machinery Family AT4G02060 81.3 0.0e+00 1137.9
Cpe16g00653 . 30 518 Core DNA Replication Machinery Family AT2G29680 60.4 1.4e-162 570.1
Cpe16g00653 . 30 479 Core DNA Replication Machinery Family AT1G07270 58.1 2.0e-142 503.1
Cpe12g01089 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.6 5.2e-257 884.0
Cpe08g01122 . 37 715 Core DNA Replication Machinery Family AT3G09660 67.0 2.4e-278 955.3
Cpe15g00364 . 16 642 Core DNA Replication Machinery Family AT2G14050 78.4 2.3e-287 984.9
Cpe16g00316 . 1 437 Core DNA Replication Machinery Family AT2G20980 51.3 2.6e-111 399.4
Cpe06g00607 CCT 7 893 Core DNA Replication Machinery Family AT1G77320 50.1 5.9e-237 818.1
Cpe17g00581 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.8 7.5e-75 277.3
Cpe19g00178 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 1.2e-61 233.0
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT1G19080 64.1 1.7e-57 219.5
Cpe01g02514 . 8 177 Core DNA Replication Machinery Family AT3G55490 64.1 1.7e-57 219.5
Cpe03g01740 . 15 164 Core DNA Replication Machinery Family AT5G49010 66.7 5.0e-52 201.4
Cpe05g01165 . 1 1529 Core DNA Replication Machinery Family AT5G67100 59.5 0.0e+00 1731.1
Cpe09g00571 . 2 625 Core DNA Replication Machinery Family AT1G67630 63.5 1.3e-223 773.1
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe06g00974 . 1 483 Core DNA Replication Machinery Family AT5G41880 60.2 1.7e-172 602.8
Cpe19g00507 . 47 1084 Core DNA Replication Machinery Family AT5G63960 80.4 0.0e+00 1696.4
Cpe03g00370 . 15 431 Core DNA Replication Machinery Family AT2G42120 73.1 3.6e-191 664.8
Cpe17g01067 . 1 359 Core DNA Replication Machinery Family AT1G67320 53.3 1.8e-130 463.4
Cpe05g00419 . 1 2115 Core DNA Replication Machinery Family AT1G08260 70.1 0.0e+00 2947.9
Cpe05g00419 . 9 2221 Core DNA Replication Machinery Family AT2G27120 67.0 0.0e+00 2918.3
Cpe02g01094 . 7 502 Core DNA Replication Machinery Family AT5G22110 69.0 2.1e-195 679.1
Cpe05g00456 . 1 929 Core DNA Replication Machinery Family AT5G22010 62.6 3.9e-304 1041.2
Cpe14g00835 . 1 333 Core DNA Replication Machinery Family AT1G63160 89.5 3.8e-172 601.3
Cpe10g01069 . 11 275 Core DNA Replication Machinery Family AT5G27740 65.4 7.0e-92 334.7
Cpe02g00567 . 3 323 Core DNA Replication Machinery Family AT1G21690 80.7 3.3e-144 508.4
Cpe01g02062 . 1 363 Core DNA Replication Machinery Family AT1G77470 73.9 2.6e-150 528.9
Cpe13g00630 . 1 455 Core DNA Replication Machinery Family AT1G77470 62.9 2.3e-146 515.8
Cpe11g01184 . 34 626 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe11g01188 . 26 618 Core DNA Replication Machinery Family AT2G06510 69.0 2.3e-252 868.6
Cpe08g00899 . 30 697 Core DNA Replication Machinery Family AT2G06510 52.1 1.1e-201 700.3
Cpe14g01003 . 34 685 Core DNA Replication Machinery Family AT2G06510 52.6 1.0e-199 693.7
Cpe04g01458 . 1 622 Core DNA Replication Machinery Family AT5G08020 67.9 3.5e-245 844.7
Cpe08g00899 . 6 804 Core DNA Replication Machinery Family AT5G45400 51.7 7.0e-231 797.7
Cpe14g01003 . 10 784 Core DNA Replication Machinery Family AT5G45400 51.6 4.8e-224 775.0
Cpe04g01458 . 1 617 Core DNA Replication Machinery Family AT5G61000 65.6 6.7e-239 823.9
Cpe08g00899 . 1 818 Core DNA Replication Machinery Family AT4G19130 53.3 4.9e-231 798.1
Cpe14g01003 . 5 771 Core DNA Replication Machinery Family AT4G19130 54.8 8.7e-228 787.3
Cpe02g00418 . 1 252 Core DNA Replication Machinery Family AT2G24490 50.2 4.2e-68 255.4
Cpe04g00203 . 1 402 Core DNA Replication Machinery Family AT5G26680 80.7 5.5e-181 630.9
Cpe03g01241 . 1 297 Core DNA Replication Machinery Family AT2G25100 66.7 1.0e-114 410.2
Cpe16g00505 . 44 785 Core DNA Replication Machinery Family AT1G08130 66.3 5.4e-278 954.1
Cpe16g00505 . 204 785 Core DNA Replication Machinery Family AT1G49250 66.6 3.6e-227 785.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008728 0 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g01003 Cpe_Chr14 FPKM 107.835396 112.508469 70.600204 71.818329 45.665443 46.571957 45.235741 107.566513 99.669273 100.744156