Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g01003 ATGGTAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGCAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTGAAATTGGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTAGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAACTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGATTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCCCAATCCTCTATGGGGGCTTCATCCGGCAACGGAATAGTTGGTAATGTGAATGTATCTGCTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATCTCATTTTAACACCCCTAATTCTGGAACAAGGTTTAACGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCAGATATTCCCAGGCCACCTCTAAATGCTTCTCATGCCCCTCCTCAGCCTATACATCAGCAGCCACCTTCAATGTACAGTAACAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCAATACGGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAAAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGATAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGTGACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGTACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGCAGGACAGATGCCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACTGCATTTCAAGAAGGCGGCGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAAAAGTTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTGAAATCAACTGTCATGAAAGCAGAAAGCATTAACTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGAAAAGCTCAGGGCAGGGAACACCATACAAAATCCTGGAGTTTTTCGCCCCGGATCGGAGAATATAGGGGGTGGACAGTTCGTGTCGCCCATTCGAAATAGTACCAATAATGTTGGCAGAGAATATGGTACATCGAACCGAGGTGTTCAGTATGGGGACCATCACAACAGTTCTAGGCCTATTCCATCCACACTGCATAACTCGCGCACGTACTGCAACAGCTGTGGGGGATCGGGTCACAGCTCAATGAACTGTCCGAGTATCATCAGCAGCCCTGCGCCATCCGTCGGAGGAGGGATATACTTAAATCGAGTTTCAGGCTCGTCTGGTCGTGACTCTGGTGAATGCTTCAAATGCCATCAAACCGGGCACTGGGGTAGGGATTGCCCTGGTTTGGCTACTTTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTGA 2499 44.46 MVASMAPFKLTEGAVMVICKRESSAETFQPVVQVIDLKLVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSMGASSGNGIVGNVNVSAASFEQPKVNQSQVPHVGSHFNTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRPPLNASHAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYGGEIRATCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATVGRTDARKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQRVKSTVMKAESINFSTESRFLLDLMEKLRAGNTIQNPGVFRPGSENIGGGQFVSPIRNSTNNVGREYGTSNRGVQYGDHHNSSRPIPSTLHNSRTYCNSCGGSGHSSMNCPSIISSPAPSVGGGIYLNRVSGSSGRDSGECFKCHQTGHWGRDCPGLATFPPAYGNSGFTAR 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8460607 8463788 - Cp4.1LG14g10080.1 Cpe14g01003 481387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g01003 832 Pfam Zinc knuckle 800 815 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 Gene3D - 358 496 IPR012340 -
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 511 688 IPR012340 -
Cpe14g01003 832 ProSiteProfiles Zinc finger CCHC-type profile. 801 815 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 223 687 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe14g01003 832 PANTHER REPLICATION FACTOR A 1, RFA1 6 721 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cpe14g01003 832 MobiDBLite consensus disorder prediction 160 243 - -
Cpe14g01003 832 Gene3D - 245 354 IPR012340 -
Cpe14g01003 832 MobiDBLite consensus disorder prediction 160 199 - -
Cpe14g01003 832 Pfam OB-fold nucleic acid binding domain 259 340 IPR004365 GO:0003676
Cpe14g01003 832 Gene3D - 8 123 IPR012340 -
Cpe14g01003 832 Pfam Replication factor-A C terminal domain 530 681 IPR013955 -
Cpe14g01003 832 Pfam Replication protein A OB domain 369 472 IPR031657 -
Cpe14g01003 832 Gene3D - 752 819 - -
Cpe14g01003 832 SMART c2hcfinal6 756 772 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 SMART c2hcfinal6 800 816 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 CDD RPA1_DBD_A 248 351 - -
Cpe14g01003 832 SUPERFAMILY Retrovirus zinc finger-like domains 787 819 IPR036875 GO:0003676|GO:0008270
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 364 492 IPR012340 -
Cpe14g01003 832 Pfam Replication factor-A protein 1, N-terminal domain 10 111 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cpe14g01003 832 ProSiteProfiles Zinc finger CCHC-type profile. 757 772 IPR001878 GO:0003676|GO:0008270
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cpe14g01003 832 SUPERFAMILY Nucleic acid-binding proteins 245 358 IPR012340 -
Cpe14g01003 832 PANTHER REPLICATION PROTEIN A SUBUNIT 6 721 - -
Cpe14g01003 832 CDD RPA1_DBD_C 514 687 IPR013955 -
Cpe14g01003 832 Gene3D - 497 688 IPR012340 -
Cpe14g01003 832 CDD RPA1_DBD_B 380 487 - -
Cpe14g01003 832 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g01184 Cpe-Chr11:9703803 Cpe14g01003 Cpe-Chr14:8460607 1.28E-68 dispersed
Cpe11g01188 Cpe-Chr11:9720977 Cpe14g01003 Cpe-Chr14:8460607 0 dispersed
Cpe14g01003 Cpe-Chr14:8460607 Cpe08g00899 Cpe-Chr8:7098340 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g01003 K07466 - csv:101211358 1429.85