Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g01030 ATGTCCACTCCATTGCGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAACTTCTCTGAGAAGAAACACAGCCCCTCACAGCAGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTTTCTTCTTATTACAGTGTCTTTGTTGCTCGCCTTGCTATAATGGTGATGCTGGCTATTTTGATTGGGATGCTGACAATACTCACATGGCACTTCACGAAGAGCTACACGGCACAGTCGCTCGATAGCTTAGCGTATGGTCTTCGACATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTTTCAGAATATGTAATGAGGAAGTACAGCAAGCCAAATGGTTTTGTCCAAGCGTTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCGGATCTTGCAAACTATTCCATCACTGCCACTCAATCATATAATATAAATCGACTTTCGTCGGGTGAAGGGTGGTCCGAACCACCCATACATGGCAATGTTTCAGCAAAATGGTACCGGGAACCGCTTGATCCTATCAGTGGTGAGAAGATGGGGAAAGCAAGGCAAATCCCACCGGAGGACTTGATTAACATTCCTGGCATTTCACAGGTAGCTGATGGTGTTGCCTCATGGCATGTTACTGTCAGCAAGTACATGGATACACCATTGCTTTCAGCAGCCCTTCCTGTTTCGGATGCTTCAAATGAAAGCATAGTTGCGGTGGTCGGTGTCACGACCGCACTTTCGAGCGTCGGTCAACTTATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCTTGTTAAGAAATACATCGACTGGTCCGAAGCTTATGATGGCTGTCGATTCCCAAGATGACGTGATTCGATTAGGAGCCGAATGGTTAAACAAAACCTATGGAAACAACTTTCCTCCTGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGTGGTCAGCAGTATTACATCGACTCGTTTTTTCTTAATCTAAAGAAGCTTCCCATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAAAGAGCTTACAAAACATTGGTTATACTCATTTCTGCCTCTTTGTGCATCTTAGTTGTTGGATGTCTATTCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTCGCGAATATGAGTCATGAGCTGAGGACACCGATGGCTGCCGTAATTGGACTGCTCGACATTCTAATGTGCGATGACTGTCTCAATAACGAACAGTTTGCGACAGTCACTCAGATTCGAAAATGCTCGACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAGGTTGAATCTGGAAAGCTAGTTTTGGAAGATGCGGAGTTTGATCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTTTCCGTGCAATGCATCGACCATAATGTGGAAACTGTATTGGATCTCTCTGATGATATGCCGAGATTAGTTCGAGGAGACTCCGGTCGGGTTGTTCAAATATTCACAAACTTGATTAGCAACTCTATCAAATTCACTACTACTGGTCACATCATTCTTCGAGGGTGGTGCGAGACGTCGAATACGCTCAAAGAAATGGGAAAGTCTTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACACGGAGACCACACGAAGAACGCGTTCAAGAAAGATAACAAAATGACCTTATGGTTTGAACTTGATGACACTGGCTGTGGGATCGATCCTAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCACGGTGGCACTGGTCTTGGACTATGCATCGTACGTACCTTGGTTAACAAGATGGGTGGTGAAATCAAGGTCGTAAAGAAAAACGGCCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACACCTGTAGACTCCATAGATCATCACTCTCAGTTTGATTTTGCAAAACATAATGCAGTGGTACTTCTTGCACTCCGTGGCAGCACGAGTCGATTAATCACGTCGCAGTGGCTTCGTAAGATCGGACTGTTCACTTTAGAGGCTTCAGAATGGAATGAACTAACTCTAATCCTTCAAGAACTCTTTCAAGCCAGAAAGTTCGAAAACAAAAAGGGATTTAGTCCACAGGATTCCCTCGGTGAACCATTACGAGCCGAGTTAACGAGAATTAAGGACATGAAAAGCCAAACGTTCATCGTCGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGATCAACTTTACTTCCTTGACAAGTACTCTGGAAAAGTGAAGTTTGCGTGGATGTTAAACCACGATACGTCCAACGCCATGAAGACGGAGCTTCGGGGAAAAGGACACTTTATAGTGAACAATAAGCCGCTGTATAGAGCAAAAATGATTCATATTTTGGAAGCTGTTATGAAGGACAGAAATCTTGAGATTCAGAGGAAAAATGGTTTAAGAAATGCATCAAAAGAAGGGGATTATCATGAATGCCTTGAAATTGATTCAACTCAGTTTGAAACTGCTAGCTCAGATGATTCTGATTTAGCTGAACTTGACAAGTCCAAGTCTCAGTGTGCAACATTTCAGGAAGAAACAATGCCAAAACCTTGTCAGCCGCCATTTTCGTCCCTTAACGATAGCTTAGTTGAGTTAACTCGTGTACGTTCGACTGTGAGTAACGCAGGGACCGGCGGTTCATGTGACATGAGACAAGACTCGTCCCATGGACTGAACTTAGGAGGCAACTATCCTAAAAGCCAAGAAGAATCAGATTCTAAGAATGGTCATGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTTCAAAGAGTAACGACGATAATGCTCGAAAGAATGGGAGCCACGGTGATCGCTGTCGGAGATGGGCTGCTGGCTGTTGAAGCTCTGACTGCAATGCTTAGTGCTGAAGAGCAAAGAAGAGAATGCCCCACAAGATATGATTTGGTCTTGATGGATTGCCAAATGCCAAAGATGGACGGCTACGAAGCAACAAAAGCGATTAGAAAGCTAGAATTGGGAACGAGCCTTCACGTACCGATCGTAGCATTGACAGCCCACGCAATGTCATCGGATGAAGCCAAATGCTTGGAAGTAGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCGGAGAAAAGTCTAA 3456 43.92 MSTPLRKVFCRISGLATSLRRNTAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGMLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPNGFVQAFHRDHRSNNTFYIYSDLANYSITATQSYNINRLSSGEGWSEPPIHGNVSAKWYREPLDPISGEKMGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALSSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSTGPKLMMAVDSQDDVIRLGAEWLNKTYGNNFPPGHEVHEENVKLGGQQYYIDSFFLNLKKLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVVGCLFILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPRLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLKEMGKSCMDQKKSRFPNRTKMKQHGDHTKNAFKKDNKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSIDHHSQFDFAKHNAVVLLALRGSTSRLITSQWLRKIGLFTLEASEWNELTLILQELFQARKFENKKGFSPQDSLGEPLRAELTRIKDMKSQTFIVVADIGILDLSTDIWKDQLYFLDKYSGKVKFAWMLNHDTSNAMKTELRGKGHFIVNNKPLYRAKMIHILEAVMKDRNLEIQRKNGLRNASKEGDYHECLEIDSTQFETASSDDSDLAELDKSKSQCATFQEETMPKPCQPPFSSLNDSLVELTRVRSTVSNAGTGGSCDMRQDSSHGLNLGGNYPKSQEESDSKNGHGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAVGDGLLAVEALTAMLSAEEQRRECPTRYDLVLMDCQMPKMDGYEATKAIRKLELGTSLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTRRKV 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8659658 8667294 + Cp4.1LG14g10340.1 Cpe14g01030 481414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g01030 1151 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 561 711 IPR003594 -
Cpe14g01030 1151 PANTHER TWO-COMPONENT HISTIDINE KINASE 136 1148 - -
Cpe14g01030 1151 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 133 - -
Cpe14g01030 1151 SUPERFAMILY CheY-like 1014 1149 IPR011006 -
Cpe14g01030 1151 Gene3D - 994 1149 - -
Cpe14g01030 1151 PRINTS Bacterial sensor protein C-terminal signature 638 652 IPR004358 GO:0016310|GO:0016772
Cpe14g01030 1151 PRINTS Bacterial sensor protein C-terminal signature 673 691 IPR004358 GO:0016310|GO:0016772
Cpe14g01030 1151 PRINTS Bacterial sensor protein C-terminal signature 656 666 IPR004358 GO:0016310|GO:0016772
Cpe14g01030 1151 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 503 709 IPR036890 -
Cpe14g01030 1151 SMART REC_2 1016 1143 IPR001789 GO:0000160
Cpe14g01030 1151 CDD REC_hyHK_CKI1_RcsC-like 1018 1143 - -
Cpe14g01030 1151 ProSiteProfiles Histidine kinase domain profile. 455 713 IPR005467 -
Cpe14g01030 1151 Pfam Response regulator receiver domain 1018 1141 IPR001789 GO:0000160
Cpe14g01030 1151 Gene3D - 516 714 IPR036890 -
Cpe14g01030 1151 ProSiteProfiles Response regulatory domain profile. 1017 1147 IPR001789 GO:0000160
Cpe14g01030 1151 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 436 515 IPR036097 GO:0000155|GO:0007165
Cpe14g01030 1151 CDD HisKA 449 510 IPR003661 GO:0000155|GO:0007165
Cpe14g01030 1151 Pfam His Kinase A (phospho-acceptor) domain 449 514 IPR003661 GO:0000155|GO:0007165
Cpe14g01030 1151 SMART HisKA_10 448 514 IPR003661 GO:0000155|GO:0007165
Cpe14g01030 1151 PANTHER OSMOSENSOR HISTIDINE KINASE 136 1148 - -
Cpe14g01030 1151 PANTHER OSMOSENSOR HISTIDINE KINASE 1 133 - -
Cpe14g01030 1151 MobiDBLite consensus disorder prediction 972 1000 - -
Cpe14g01030 1151 Gene3D - 436 515 - -
Cpe14g01030 1151 SMART HKATPase_4 561 713 IPR003594 -
Cpe14g01030 1151 MobiDBLite consensus disorder prediction 972 1010 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g01030 - - - csv:101217761 2039.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g01030 Cpe-Chr14:8659658 Cpe16g00390 Cpe-Chr16:5476764 7.57E-15 dispersed
Cpe07g00860 Cpe-Chr7:7780854 Cpe14g01030 Cpe-Chr14:8659658 6.21E-26 transposed
Cpe14g01030 Cpe-Chr14:8659658 Cpe08g01314 Cpe-Chr8:9453335 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe14g01030 . 5 1148 Histidine Kinase Gene Family AT2G17820 63.4 0.0e+00 1401.7
Cpe08g01314 . 5 1195 Histidine Kinase Gene Family AT2G17820 61.5 0.0e+00 1370.1
Cpe01g00013 . 28 1008 Histidine Kinase Gene Family AT2G01830 70.6 0.0e+00 1326.2
Cpe13g00429 CCT 5 964 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1307.7
Cpe01g01858 CCT 23 1023 Histidine Kinase Gene Family AT2G01830 69.1 0.0e+00 1302.0
Cpe16g00390 . 301 1244 Histidine Kinase Gene Family AT2G01830 52.9 1.2e-269 926.8
Cpe04g00676 . 280 1205 Histidine Kinase Gene Family AT2G01830 52.8 4.0e-268 921.8
Cpe01g00966 . 99 1016 Histidine Kinase Gene Family AT2G01830 52.0 7.5e-259 891.0
Cpe02g00308 CCT 1 998 Histidine Kinase Gene Family AT5G10720 57.2 1.2e-292 1003.0
Cpe06g00274 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.1 6.1e-289 990.7
Cpe11g00763 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.5 0.0e+00 1820.1
Cpe07g00609 . 35 1108 Histidine Kinase Gene Family AT1G09570 70.5 0.0e+00 1575.5
Cpe15g00685 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1206.0
Cpe03g01327 CST 443 1507 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1178.3
Cpe08g00149 CST 31 1111 Histidine Kinase Gene Family AT1G09570 52.2 0.0e+00 1138.6
Cpe03g01327 CST 421 1448 Histidine Kinase Gene Family AT2G18790 77.5 0.0e+00 1625.1
Cpe08g00149 CST 30 1052 Histidine Kinase Gene Family AT2G18790 76.9 0.0e+00 1594.3
Cpe20g00493 CCT 31 1050 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1228.8
Cpe09g00775 CCT 31 1025 Histidine Kinase Gene Family AT2G18790 60.2 0.0e+00 1212.2
Cpe11g00763 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cpe15g00685 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.0 0.0e+00 1076.6
Cpe07g00609 . 38 1042 Histidine Kinase Gene Family AT2G18790 50.3 3.0e-298 1021.9
Cpe15g00685 . 12 1115 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1359.0
Cpe03g01327 CST 429 1509 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1124.4
Cpe11g00763 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1110.5
Cpe08g00149 CST 31 1113 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1099.7
Cpe03g01327 CST 438 1509 Histidine Kinase Gene Family AT4G16250 75.8 0.0e+00 1668.7
Cpe08g00149 CST 34 1113 Histidine Kinase Gene Family AT4G16250 73.5 0.0e+00 1627.1
Cpe20g00493 CCT 32 1112 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1268.8
Cpe09g00775 CCT 38 1081 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1230.7
Cpe11g00763 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1135.9
Cpe15g00685 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1106.7
Cpe07g00609 . 37 1103 Histidine Kinase Gene Family AT4G16250 50.5 7.1e-311 1063.9
Cpe20g00493 CCT 15 1126 Histidine Kinase Gene Family AT4G18130 62.7 0.0e+00 1369.8
Cpe09g00775 CCT 15 1098 Histidine Kinase Gene Family AT4G18130 60.2 0.0e+00 1308.1
Cpe03g01327 CST 446 1507 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1250.3
Cpe08g00149 CST 42 1111 Histidine Kinase Gene Family AT4G18130 56.8 0.0e+00 1233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50564 PF02518 HATPase_c 6.70E-23 CL0025 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g01030 Cpe_Chr14 FPKM 2.90897 2.046484 3.63361 3.365453 8.561442 8.87674 8.57544 3.408483 2.978833 3.081297