Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g01056 ATGATGGAGTGGGAAAAGGCTGAGCACCAAACTCCGTACCACCACCAGAACCCTCCTCTTCGAGACGATCACCTCCATCATCTCACCGGAACTACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCCACCATTTGCGAGCAGCTCGTTGAGATGCACAAGACACTCACTGCTCACCAGGATCTCACAGGAATGAGGTTGGGTAACATGTACTGTGAGCCACTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCAACGCCTGTGCAACTTCAGATCTTGGAGCGCATATTCGAGCAAGGGAATGGAACTCCCAGCAAGCAGAAGATCAAAGAGATCACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGCACAACACCCGCCTATGGTGAATCAGAAGTGGAGACAGAAGTCGAGTCGCCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAGACCTCTGCACCTTTGGGGGAGGACATGTGCTTCCAGAGTCCGGAGATGAGTTCTGAACTGCATTTCCTGGATCCAAACACCAACAAAGCTGATACTTTGTTTTCAAATGGAAGTTTAAAAAGTGCAAGAAGTTTCAGCCAGATGTCTTTTTATGAGGGAAACGAGCAGCTGACAGGAAAGATTGAAACGCCAGAGAACTATAGTCTTTACCAGCAAGCGGAAGGCTACAGCATGACCGAACGACCCTGA 834 48.56 MMEWEKAEHQTPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTTPAYGESEVETEVESPKDKKTKPVDFQTHQTSAPLGEDMCFQSPEMSSELHFLDPNTNKADTLFSNGSLKSARSFSQMSFYEGNEQLTGKIETPENYSLYQQAEGYSMTERP 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8820899 8830214 - Cp4.1LG14g10580.1 Cpe14g01056 481440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g01056 277 MobiDBLite consensus disorder prediction 156 189 - -
Cpe14g01056 277 MobiDBLite consensus disorder prediction 175 189 - -
Cpe14g01056 277 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Cpe14g01056 277 CDD homeodomain 100 162 IPR001356 GO:0003677
Cpe14g01056 277 PANTHER - 2 274 - -
Cpe14g01056 277 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Cpe14g01056 277 Gene3D - 102 167 - -
Cpe14g01056 277 SUPERFAMILY Homeodomain-like 96 163 IPR009057 -
Cpe14g01056 277 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 274 IPR044559 GO:0003700
Cpe14g01056 277 SMART HOX_1 98 165 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g01056 - - - csv:101203410 521.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00017 Cpe-Chr6:80276 Cpe14g01056 Cpe-Chr14:8820899 1.60E-87 dispersed
Cpe14g01056 Cpe-Chr14:8820899 Cpe04g01371 Cpe-Chr4:11141487 2.13E-15 dispersed
Cpe14g01056 Cpe-Chr14:8820899 Cpe02g00030 Cpe-Chr2:157492 9.71E-94 wgd
Cpe14g01056 Cpe-Chr14:8820899 Cpe08g01292 Cpe-Chr8:9330777 3.32E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe09g01115 CCT,ECH 3 180 Wox Gene Family AT3G18010 56.9 8.0e-48 188.3
Cpe20g00149 CCT,CST,ECH 1 191 Wox Gene Family AT3G18010 55.4 4.4e-46 182.6
Cpe04g01371 CCT,CST,ECH 1 165 Wox Gene Family AT3G18010 53.8 2.1e-40 163.7
Cpe07g00494 CCT 5 138 Wox Gene Family AT1G46480 62.2 5.5e-43 171.4
Cpe19g01046 CCT 1 384 Wox Gene Family AT2G33880 50.7 3.4e-68 256.1
Cpe14g01056 . 1 274 Wox Gene Family AT4G35550 51.9 6.1e-72 268.1
Cpe06g00017 CCT 1 191 Wox Gene Family AT4G35550 61.0 2.7e-56 216.1
Cpe02g00030 CCT 238 399 Wox Gene Family AT4G35550 66.9 3.3e-54 209.1
Cpe02g00030 CCT 275 406 Wox Gene Family AT1G20700 58.5 6.7e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50566 PF00046 Homeodomain 8.80E-19 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g01056 Cpe_Chr14 FPKM 14.771937 14.857702 21.41781 21.799191 1.653272 1.797876 2.306601 25.352203 24.437296 27.683754