Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe14g01071 | ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAGGATGTTCCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGCGAAAGATGAGCTCCATGATTCTCTCTGTGTGACAGCTGAGGCAACTCCCAACTCATGTGAAAAAGTGATTGACTCACCTGAGATTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGGGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATCGCAAATCATGATGAACCTGTAACTCCCCATCCAATGCCATCTTGTATTAAAGCGGAAACAGAAAATGCCATAGGGTTGAAGCTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTATATTCTGTTGTTCTTTCTGTAATGACCACTGTGTTTCTTGTCTGGCGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTACTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGCAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCCAAACCACAGCTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGGCGGGACGCTTGGTAATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACACGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA | 1398 | 44.85 | MCDAKEKQESAQDVPVALSEGNQVNAKDELHDSLCVTAEATPNSCEKVIDSPEILVKTGPDELPPRELGLDAATSNSHIETVQSSMDAKSEAFEMPETKTGSLDHALIANHDEPVTPHPMPSCIKAETENAIGLKLNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVYSVVLSVMTTVFLVWRDFMQVVAASRRVFQAPKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE | 465 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 8914368 | 8919902 | - | Cp4.1LG14g10660.1 | Cpe14g01071 | 481455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe14g01071 | 465 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe14g01071 | 465 | Gene3D | - | 354 | 465 | IPR008978 | - | |
Cpe14g01071 | 465 | SUPERFAMILY | HSP20-like chaperones | 376 | 461 | IPR008978 | - | |
Cpe14g01071 | 465 | SMART | ARID_2 | 168 | 259 | - | - | |
Cpe14g01071 | 465 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 365 | 465 | IPR002068 | - | |
Cpe14g01071 | 465 | Pfam | Hsp20/alpha crystallin family | 382 | 462 | IPR002068 | - | |
Cpe14g01071 | 465 | CDD | ACD_sHsps_p23-like | 384 | 460 | - | - | |
Cpe14g01071 | 465 | CDD | ARID | 176 | 220 | - | - | |
Cpe14g01071 | 465 | Pfam | ARID/BRIGHT DNA binding domain | 174 | 242 | IPR001606 | GO:0003677 | |
Cpe14g01071 | 465 | Gene3D | - | 157 | 266 | IPR036431 | GO:0003677 | |
Cpe14g01071 | 465 | SMART | bright_3 | 172 | 264 | IPR001606 | GO:0003677 | |
Cpe14g01071 | 465 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 105 | 463 | IPR045147 | GO:0006357 | |
Cpe14g01071 | 465 | MobiDBLite | consensus disorder prediction | 269 | 293 | - | - | |
Cpe14g01071 | 465 | ProSiteProfiles | ARID domain profile. | 171 | 271 | IPR001606 | GO:0003677 | |
Cpe14g01071 | 465 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE | 105 | 463 | - | - | |
Cpe14g01071 | 465 | SUPERFAMILY | ARID-like | 166 | 271 | IPR036431 | GO:0003677 | |
Cpe14g01071 | 465 | MobiDBLite | consensus disorder prediction | 269 | 283 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe14g01071 | Cpe-Chr14:8914368 | Cpe02g00012 | Cpe-Chr2:85595 | 1.33E-117 | wgd | |
Cpe14g01071 | Cpe-Chr14:8914368 | Cpe08g01275 | Cpe-Chr8:9220943 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50569 | PF00011 | HSP20 | 7.30E-06 | CL0190 | Cpe | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe14g01071 | - | - | cmax:111465194 | 822.772 |