Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g01071 ATGTGTGATGCGAAGGAGAAACAGGAATCTGCACAGGATGTTCCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATGCGAAAGATGAGCTCCATGATTCTCTCTGTGTGACAGCTGAGGCAACTCCCAACTCATGTGAAAAAGTGATTGACTCACCTGAGATTCTTGTCAAAACTGGCCCTGATGAGTTGCCCCCAAGGGAGTTGGGTTTAGATGCTGCTACTTCCAACTCTCACATAGAAACTGTCCAGTCCTCCATGGATGCCAAATCTGAGGCCTTTGAGATGCCTGAAACTAAAACTGGTTCTCTTGATCATGCTTTAATCGCAAATCATGATGAACCTGTAACTCCCCATCCAATGCCATCTTGTATTAAAGCGGAAACAGAAAATGCCATAGGGTTGAAGCTCAATGAAGACAGTGTTACTACACCTCATAATGGGCATACAAATATGAGTCACTCGTTTATTTTGGATGAAAATCATATTGCTGAAGGTAGTGAATCCGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAACTTCTTCAGAGAAAGAAGCCTGGAGTTCAAACCTCCCAAGTTCTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCTGTGACTAGATTGGGAGGCTATGACAAGGTATATTCTGTTGTTCTTTCTGTAATGACCACTGTGTTTCTTGTCTGGCGTGACTTCATGCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCAAGCCCCCAAAGCTCTCCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTTAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGACCAGGATCAGGTAGAGCACGAAGAGATGCTGCAGCACGTGCCATGCAGGGTTGGCACTCACGTCTACTGGGAAATGGTGAAGTTAGTGACCCTATTATCAAGGATAAGAACTCACTTTCAATGCAGAAAAGGGAAAAACAACTTAAAAGCATTGGTCTTCTTAAACGCAAGAAATCATCTTACATGGAGCATGCCATGAAATCAGCACGTACAAAATCACCCAAACCACAGCTGGACGTAGCAGTAGTTGATATTGGACAACCAGCCGACTGGGTCAAAGTCAATGTGCAGAAAACTAAAGATTGTTATGAGGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCGGCGGGACGCTTGGTAATTAGTGGTGAACCCGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCGTCGAGGATTGATCCACATCAGACTTCTGCCGTTGTCACCTTACACGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1398 44.85 MCDAKEKQESAQDVPVALSEGNQVNAKDELHDSLCVTAEATPNSCEKVIDSPEILVKTGPDELPPRELGLDAATSNSHIETVQSSMDAKSEAFEMPETKTGSLDHALIANHDEPVTPHPMPSCIKAETENAIGLKLNEDSVTTPHNGHTNMSHSFILDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVYSVVLSVMTTVFLVWRDFMQVVAASRRVFQAPKALLDYERHKTHGGELSVPIASNSEPMSIENQGPGSGRARRDAAARAMQGWHSRLLGNGEVSDPIIKDKNSLSMQKREKQLKSIGLLKRKKSSYMEHAMKSARTKSPKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 8914368 8919902 - Cp4.1LG14g10660.1 Cpe14g01071 481455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g01071 465 MobiDBLite consensus disorder prediction 1 25 - -
Cpe14g01071 465 Gene3D - 354 465 IPR008978 -
Cpe14g01071 465 SUPERFAMILY HSP20-like chaperones 376 461 IPR008978 -
Cpe14g01071 465 SMART ARID_2 168 259 - -
Cpe14g01071 465 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 365 465 IPR002068 -
Cpe14g01071 465 Pfam Hsp20/alpha crystallin family 382 462 IPR002068 -
Cpe14g01071 465 CDD ACD_sHsps_p23-like 384 460 - -
Cpe14g01071 465 CDD ARID 176 220 - -
Cpe14g01071 465 Pfam ARID/BRIGHT DNA binding domain 174 242 IPR001606 GO:0003677
Cpe14g01071 465 Gene3D - 157 266 IPR036431 GO:0003677
Cpe14g01071 465 SMART bright_3 172 264 IPR001606 GO:0003677
Cpe14g01071 465 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 105 463 IPR045147 GO:0006357
Cpe14g01071 465 MobiDBLite consensus disorder prediction 269 293 - -
Cpe14g01071 465 ProSiteProfiles ARID domain profile. 171 271 IPR001606 GO:0003677
Cpe14g01071 465 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 105 463 - -
Cpe14g01071 465 SUPERFAMILY ARID-like 166 271 IPR036431 GO:0003677
Cpe14g01071 465 MobiDBLite consensus disorder prediction 269 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g01071 - - - cmax:111465194 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g01071 Cpe-Chr14:8914368 Cpe02g00012 Cpe-Chr2:85595 1.33E-117 wgd
Cpe14g01071 Cpe-Chr14:8914368 Cpe08g01275 Cpe-Chr8:9220943 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50569 PF00011 HSP20 7.30E-06 CL0190 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe14g01071 Cpe_Chr14 FPKM 40.598053 42.575466 34.66766 32.6357 25.844347 25.954477 26.273985 23.607718 23.396286 26.422501