Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00076 ATGGAATCCTCTTATTTTTCGTTCTCCGATTCCGATTTCTCGACGGGATCTTCGTTCGGATCGGCCGAATCGTCGTTCTCATGGAGCGAATTTTTCCCGATTCCACTGCCGGATGAGTTTCTCGGAAATCAAACGGAATCGGAATCGAAAATTGCGGTGAAGGAAGAAATCGAAGTGAGTTCGATCGATTTCGCGGAGGAGAAACAGAGGAAAACGACGGCGGAGAAGAGTTACAGAGGAGTAAGGCGACGGCCATGGGGAAAATACGCGGCGGAGATTAGGGATTCAACGAGGCATGGAGTTAGGGTTTGGCTTGGAACATTTGATAACGCGGAAGCCGCGGCGTTAGCGTATGATCAAGCGGCATTTTCAATGAGAGGAGCACTGGCGGTTCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTCCAGGATATTAAGTATCAACTGGAAGAAGGTTGCTCGCCGGTGGTGGCTTTGAAGAGAAAACACTCTCTGAGAAGGAAATCGGCGGCGGCGGCGGCGGTGGAGAAGAAGAAGATGAAGAAGAAGAAGAACATGGTGATTTTTGAAGATTTGGGAACAGAGTATTTGGAAGAACTGTTGATGCTAAGTTCATATGAGAGTTGTAGCATCAACCCCTTCTGA 648 48.3 MESSYFSFSDSDFSTGSSFGSAESSFSWSEFFPIPLPDEFLGNQTESESKIAVKEEIEVSSIDFAEEKQRKTTAEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDNAEAAALAYDQAAFSMRGALAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSLRRKSAAAAAVEKKKMKKKKNMVIFEDLGTEYLEELLMLSSYESCSINPF 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 552562 553209 + Cp4.1LG15g00680.1 Cpe15g00076 481534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00076 215 Gene3D AP2/ERF domain 76 137 IPR036955 GO:0003700|GO:0006355
Cpe15g00076 215 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Cpe15g00076 215 PRINTS Ethylene responsive element binding protein signature 101 117 IPR001471 GO:0003700|GO:0006355
Cpe15g00076 215 SMART rav1_2 77 141 IPR001471 GO:0003700|GO:0006355
Cpe15g00076 215 CDD AP2 76 136 IPR001471 GO:0003700|GO:0006355
Cpe15g00076 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 46 204 - -
Cpe15g00076 215 ProSiteProfiles AP2/ERF domain profile. 77 135 IPR001471 GO:0003700|GO:0006355
Cpe15g00076 215 SUPERFAMILY DNA-binding domain 77 137 IPR016177 GO:0003677
Cpe15g00076 215 Pfam AP2 domain 77 127 IPR001471 GO:0003700|GO:0006355
Cpe15g00076 215 MobiDBLite consensus disorder prediction 1 23 - -
Cpe15g00076 215 PANTHER DNA-BINDING DOMAIN 46 204 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00076 Cpe-Chr15:552562 Cpe13g00252 Cpe-Chr13:1966910 2.48E-26 dispersed
Cpe17g00891 Cpe-Chr17:6936608 Cpe15g00076 Cpe-Chr15:552562 1.19E-15 transposed
Cpe12g00144 Cpe-Chr12:921633 Cpe15g00076 Cpe-Chr15:552562 7.08E-44 wgd
Cpe15g00076 Cpe-Chr15:552562 Cpe17g00191 Cpe-Chr17:1218984 1.98E-21 wgd
Cpe15g00076 Cpe-Chr15:552562 Cpe03g01512 Cpe-Chr3:11858223 1.90E-22 wgd
Cpe15g00076 Cpe-Chr15:552562 Cpe05g00060 Cpe-Chr5:304277 1.36E-06 wgd
Cpe15g00076 Cpe-Chr15:552562 Cpe08g00329 Cpe-Chr8:2060730 4.04E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50578 PF00847 AP2 3.80E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00076 K14516 - csv:101220325 242.662