Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe15g00076 | ATGGAATCCTCTTATTTTTCGTTCTCCGATTCCGATTTCTCGACGGGATCTTCGTTCGGATCGGCCGAATCGTCGTTCTCATGGAGCGAATTTTTCCCGATTCCACTGCCGGATGAGTTTCTCGGAAATCAAACGGAATCGGAATCGAAAATTGCGGTGAAGGAAGAAATCGAAGTGAGTTCGATCGATTTCGCGGAGGAGAAACAGAGGAAAACGACGGCGGAGAAGAGTTACAGAGGAGTAAGGCGACGGCCATGGGGAAAATACGCGGCGGAGATTAGGGATTCAACGAGGCATGGAGTTAGGGTTTGGCTTGGAACATTTGATAACGCGGAAGCCGCGGCGTTAGCGTATGATCAAGCGGCATTTTCAATGAGAGGAGCACTGGCGGTTCTGAATTTTCCGGTGGAAATGGTGAGGGAATCACTCCAGGATATTAAGTATCAACTGGAAGAAGGTTGCTCGCCGGTGGTGGCTTTGAAGAGAAAACACTCTCTGAGAAGGAAATCGGCGGCGGCGGCGGCGGTGGAGAAGAAGAAGATGAAGAAGAAGAAGAACATGGTGATTTTTGAAGATTTGGGAACAGAGTATTTGGAAGAACTGTTGATGCTAAGTTCATATGAGAGTTGTAGCATCAACCCCTTCTGA | 648 | 48.3 | MESSYFSFSDSDFSTGSSFGSAESSFSWSEFFPIPLPDEFLGNQTESESKIAVKEEIEVSSIDFAEEKQRKTTAEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDNAEAAALAYDQAAFSMRGALAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSLRRKSAAAAAVEKKKMKKKKNMVIFEDLGTEYLEELLMLSSYESCSINPF | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 552562 | 553209 | + | Cp4.1LG15g00680.1 | Cpe15g00076 | 481534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe15g00076 | 215 | Gene3D | AP2/ERF domain | 76 | 137 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | PRINTS | Ethylene responsive element binding protein signature | 78 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | PRINTS | Ethylene responsive element binding protein signature | 101 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | SMART | rav1_2 | 77 | 141 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | CDD | AP2 | 76 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B | 46 | 204 | - | - | |
Cpe15g00076 | 215 | ProSiteProfiles | AP2/ERF domain profile. | 77 | 135 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | SUPERFAMILY | DNA-binding domain | 77 | 137 | IPR016177 | GO:0003677 | |
Cpe15g00076 | 215 | Pfam | AP2 domain | 77 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe15g00076 | 215 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cpe15g00076 | 215 | PANTHER | DNA-BINDING DOMAIN | 46 | 204 | IPR044808 | GO:0003700|GO:0009873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe15g00076 | Cpe-Chr15:552562 | Cpe13g00252 | Cpe-Chr13:1966910 | 2.48E-26 | dispersed | |
Cpe17g00891 | Cpe-Chr17:6936608 | Cpe15g00076 | Cpe-Chr15:552562 | 1.19E-15 | transposed | |
Cpe12g00144 | Cpe-Chr12:921633 | Cpe15g00076 | Cpe-Chr15:552562 | 7.08E-44 | wgd | |
Cpe15g00076 | Cpe-Chr15:552562 | Cpe17g00191 | Cpe-Chr17:1218984 | 1.98E-21 | wgd | |
Cpe15g00076 | Cpe-Chr15:552562 | Cpe03g01512 | Cpe-Chr3:11858223 | 1.90E-22 | wgd | |
Cpe15g00076 | Cpe-Chr15:552562 | Cpe05g00060 | Cpe-Chr5:304277 | 1.36E-06 | wgd | |
Cpe15g00076 | Cpe-Chr15:552562 | Cpe08g00329 | Cpe-Chr8:2060730 | 4.04E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50578 | PF00847 | AP2 | 3.80E-14 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe15g00076 | K14516 | - | csv:101220325 | 242.662 |