Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00093 ATGAAGAGCGCCGTTAAGATAAGAAGGGGGAGGGGCGCTGGAAGAGGGGGGAATATTAGGAAGATAATGAAGTGCTTGTGTTCTGGTGAGAAAGCAGCTGGGGATGATGGGATTCCTGCATCAGAATCGCCTTTGCCTGTGGAGAATTCAGCAAGCGGGCGCTCTTCACGGACTAGCGAGATCAACAAGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCCTCGCTTCGTGAGAGTGGTTCTTTGAATTATGAGGAAGCAAGAGCATTGCTGGGGAGATATGAATATCAAAAGGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATTGCTGCTATAACTAGTAAGATAATGATCTCCATAGGTAGAAGAGGCGACTGCCCGAGAAGACGATCGCAAAGTTTTACTACTCCTCCAATGTCGATGCATACTGTCAGTTTACTCTTGGAAGGCATCTTTTTCAAAGCAAAATCACTGCAAGCCCTTGGGAAGTTCGGAGAAGCTGCTCGAACTTGCAAAGTTATTCTGGACATACTCGAATCTTCGTTCCCCGAAGGCTTGCCTGAAAACTTTGGGGCTGATTGTAAATTGCAGGAGACCGTTACAAAGGCGGCGGAGCTGCTACCGGAGTTATGGAAGCTAGCCGATGCTTCTCAAGAAGCGATCCTTTCGTACCGGCGGGCACTTCTTCATCTGTGGAACCTTGATGCGGAAACCACTGCTCGAATTCAGAAAGAGTTTGCTATTTTTCTTCTGTACAGTGGAACCGAAGCATGCCCTCCTAATCTTCGGTCGCAAATGGACAGCTCGTTTGTACCGAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTTCTTAGAAAAGTTATTCTTAAAAGGATTGATTGGGATCCATCAATCTTGGATCACCTCTCCTTTGCACTAACAATATCAGGGGATACAAGGGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACAACGACAAGAAAGGTACCATGCTCTAGCTCTTTGTTATTATGGAGCAGGTGAAGACTTGGCTGCTTTGAATCTGTTGAGGAAAGTGTTGAGCAGTCATGAGGATCCTAAATCACTTCCCCCTCTACTGATGGCGTCGAAGATTTGTGGAGAGAACTGCGAGCTTGCCGAAGAGGGATCGAGTTTCGCTTATAGAGCTCTGCAAAGCCTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTATCTCACTGTCTGTGTATTCGAAATCCGCCGTTGCAGATTCCGAGAAGTCCTCCAGACAATGTGAGGCAATGGAGGCCCTCGAAGCTGCACGGAGGAAGACTAGAATGACCGACCCGAATGTTCTCTATCATTCGAGTCTTCAATATGCAGACGAGAGGAATTTAGATTCAGCACTTTATTATGCAAGGAAGTGTCTCAAGCTGGAAGGTGGATCTAATATCAAAACTTGGTTACTACTGGCTCGGATTCTCTCCGCCCAAAAACGATATACCGATAGCGAAAGTATTATAAATGCAGCTCTGGATCAAACAGGGAAATGGGATCAAGGCGAGTTGCTTCGAACAAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATCGAGACTTACAGTCGATTACTCGCTCTTTTTCAAATTCGGAGTAAAAGTTTCGGTTCGGGAGATAAGAAGCTACGGAACAGTACTAGAAGATTGCAAATGGAAGTGTGGCATGATCTAGCTCTAGTCTACATAAGGCTCTCGCAGTGGCACGATGCCGAGGCCTGCCTTTCGAAGTCGAAGGCCATCTGTTCTCATTCGGCTTCTAGATGTCATATTACAGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGCTTTTATGGCTGCTCTGGACATTGATCCCATTCATGTCCCGAGCTTGGTTTCGTCTGCCGTGGCTATCAGACATCTCGGCCACCGATCGCATCCCGTTGTACGCAGCTTTTTGATGGATGCTCTACGGCTCGACCAGACGAACCATGGTGCGTGGTACAATCTCGGGCTGTTCTACAAATCTGAAGGAACCAAGTCTTCATTGGTTGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2193 45.55 MKSAVKIRRGRGAGRGGNIRKIMKCLCSGEKAAGDDGIPASESPLPVENSASGRSSRTSEINKKPEIGNIEEAESSLRESGSLNYEEARALLGRYEYQKGNIEAALHVFEGIDIAAITSKIMISIGRRGDCPRRRSQSFTTPPMSMHTVSLLLEGIFFKAKSLQALGKFGEAARTCKVILDILESSFPEGLPENFGADCKLQETVTKAAELLPELWKLADASQEAILSYRRALLHLWNLDAETTARIQKEFAIFLLYSGTEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVILKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGILQRQERYHALALCYYGAGEDLAALNLLRKVLSSHEDPKSLPPLLMASKICGENCELAEEGSSFAYRALQSLDHGCDQLEGVANCLLGISLSVYSKSAVADSEKSSRQCEAMEALEAARRKTRMTDPNVLYHSSLQYADERNLDSALYYARKCLKLEGGSNIKTWLLLARILSAQKRYTDSESIINAALDQTGKWDQGELLRTKAKLLIAQDEFKGAIETYSRLLALFQIRSKSFGSGDKKLRNSTRRLQMEVWHDLALVYIRLSQWHDAEACLSKSKAICSHSASRCHITGMLYEAKGLYKEALKAFMAALDIDPIHVPSLVSSAVAIRHLGHRSHPVVRSFLMDALRLDQTNHGAWYNLGLFYKSEGTKSSLVEAVECFEAATFLEESAPVEPFR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 703413 707560 + Cp4.1LG15g00940.1 Cpe15g00093 481551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00093 730 PANTHER PROTEIN NPGR2 13 730 - -
Cpe15g00093 730 SMART tpr_5 531 564 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 153 186 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 460 493 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 688 724 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 584 617 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 338 371 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 618 651 IPR019734 GO:0005515
Cpe15g00093 730 SMART tpr_5 495 528 IPR019734 GO:0005515
Cpe15g00093 730 SUPERFAMILY TPR-like 339 560 IPR011990 GO:0005515
Cpe15g00093 730 Gene3D Tetratricopeptide repeat domain 65 567 IPR011990 GO:0005515
Cpe15g00093 730 MobiDBLite consensus disorder prediction 33 68 - -
Cpe15g00093 730 Pfam Tetratricopeptide repeat 624 650 IPR019734 GO:0005515
Cpe15g00093 730 PANTHER PROTEIN NPG1 13 730 IPR043376 -
Cpe15g00093 730 ProSiteProfiles TPR repeat profile. 618 651 IPR019734 GO:0005515
Cpe15g00093 730 SUPERFAMILY TPR-like 532 702 IPR011990 GO:0005515
Cpe15g00093 730 Gene3D Tetratricopeptide repeat domain 572 724 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00076 Cpe15g00093 CCT
Cpe05g00076 Cpe15g00093 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00607 Cpe-Chr2:3665482 Cpe15g00093 Cpe-Chr15:703413 1.54E-166 dispersed
Cpe06g00565 Cpe-Chr6:3416728 Cpe15g00093 Cpe-Chr15:703413 0 dispersed
Cpe11g00118 Cpe-Chr11:649898 Cpe15g00093 Cpe-Chr15:703413 0 transposed
Cpe15g00093 Cpe-Chr15:703413 Cpe03g01531 Cpe-Chr3:11950278 3.82E-18 wgd
Cpe15g00093 Cpe-Chr15:703413 Cpe05g00076 Cpe-Chr5:372927 0 wgd
Cpe15g00093 Cpe-Chr15:703413 Cpe08g00348 Cpe-Chr8:2168722 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00093 K21843 - csv:101223229 1241.1