Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00122 ATGGCGGTCACTCTTAGACTACAGTTTTCAACCGCTTCATTAATGTTCTTCCTTCTTCTCAACATCCTCTTCGTTCAATCCAGTTTTGCTGGAGATCAGCGATTACAGAGCTTTAATTCTTCATCCATGGCGGACAGTTTTGCTGGAGATCAGCGATTGCAGAGCTTTAATTCTTCATCCATGGCGGACAGTTTTTCTGGAGATCAGAGACTGCAGAGCTTCAATTCTTCATCCATGGCGGACCGGTATGTTAAGAATGAGCATGCCGTTGATAATCCAGAGGAAATTGCATCAATGGTGGATTTGAGCATACGCAACAGCACAGAGAGGAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAACCCAATTGATGATTGTTGGCGTTGTGACCCACATTGGCAACTGCGGCGAAAGCGCCTCGCCAATTGCGGCATTGGGTTTGGTCGTAATGCAGTTGGTGGCCGTGATGGGCGTTACTACGTCGTCTCTGATCCACGTGACGACGATCCTGTCAATCCCAGACCAGGCACCCTTCGCCATGCTGTGATTCAAGACAGACCATTATGGATTGTGTTCAAACGAGACATGGTGATCACTTTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGGCGTGGCGTCAATGTGCACATCGCTTATGGTGCTTGTATTACTATCCAATTCATAACCAATGTTATTATTCATGGTTTGCATATTCATGACTGCAAGCCAACGGGGAACGCCATGGTTCGAAGCTCGCCTAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGGATTTCCATTTTTGGGTCGAGTCATATTTGGATTGACCATAATTCTCTTTCTTCTTGTTCTGATGGGCTCATTGATGCTATCATGGGATCAACTGCTATCACAATTTCTAACAATTACTTCACCCACCACAATGAGGTGATGCTCTTGGGACATAGTGACTCTTATGTAAGGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGGGCTGGTGCAGGAGCCAGTTATGCAAGAGCCTCAAGCTTAGGAGCCAAATCCTCTTCCTTGGTGGGCTCGCTTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1146 45.9 MAVTLRLQFSTASLMFFLLLNILFVQSSFAGDQRLQSFNSSSMADSFAGDQRLQSFNSSSMADSFSGDQRLQSFNSSSMADRYVKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPHWQLRRKRLANCGIGFGRNAVGGRDGRYYVVSDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSSCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGAGAGASYARASSLGAKSSSLVGSLTSNAGALSCRRGFRC 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 968547 974601 - Cp4.1LG15g01230.1 Cpe15g00122 481580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00122 381 PANTHER PECTATE LYASE 18-RELATED 342 378 IPR045032 GO:0030570
Cpe15g00122 381 PANTHER PECTATE LYASE 18-RELATED 80 344 IPR045032 GO:0030570
Cpe15g00122 381 SUPERFAMILY Pectin lyase-like 99 343 IPR011050 -
Cpe15g00122 381 SMART amb_all 196 374 IPR002022 -
Cpe15g00122 381 Gene3D - 121 347 IPR012334 -
Cpe15g00122 381 PANTHER PECTATE LYASE 342 378 - -
Cpe15g00122 381 PANTHER PECTATE LYASE 80 344 - -
Cpe15g00122 381 Pfam Pectate lyase 205 341 IPR002022 -
Cpe15g00122 381 PRINTS Pollen allergen Amb family signature 204 220 IPR018082 -
Cpe15g00122 381 PRINTS Pollen allergen Amb family signature 268 289 IPR018082 -
Cpe15g00122 381 PRINTS Pollen allergen Amb family signature 168 193 IPR018082 -
Cpe15g00122 381 PRINTS Pollen allergen Amb family signature 144 161 IPR018082 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00107 Cpe15g00122 CCT
Cpe05g00107 Cpe15g00122 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01079 Cpe-Chr2:9910324 Cpe15g00122 Cpe-Chr15:968547 6.16E-65 dispersed
Cpe15g00122 Cpe-Chr15:968547 Cpe17g00243 Cpe-Chr17:1588320 1.04E-179 dispersed
Cpe12g00102 Cpe-Chr12:619595 Cpe15g00122 Cpe-Chr15:968547 0 wgd
Cpe15g00122 Cpe-Chr15:968547 Cpe03g01570 Cpe-Chr3:12149997 1.63E-11 wgd
Cpe15g00122 Cpe-Chr15:968547 Cpe05g00107 Cpe-Chr5:547453 4.69E-07 wgd
Cpe15g00122 Cpe-Chr15:968547 Cpe08g00382 Cpe-Chr8:2377087 3.14E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00122 K01728 - csv:101207204 542.732