Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00149 ATGGGGCCGGGCGTGTTCTTGTCTGGCGCTGCAAGACAGGCCGAGATTCTCAGAAAAGATGGAAATCATTATTTCCAGAAGGGCCGGATTGGAGCCGCCATTGAAGCCTATACCGAGGCGATTACGCTATGTCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTTGACAACAATTCTGTCAAGGCACATTACATGGTAGGATTAGCATTAATACAAAACAAAGACTATCCTGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGAGGTGCAAATCAAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAATGCAAAATACAGGGAGTGGGAACAAGCATCCACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAGGCTTGTGAGGCTGCCCTTGAACAAAAATACTTCCTTGACCAGTCTGAACCAGAAGGGTTCGTAGATCAAGCCGAAATCGCTCATCGGGAACAATTAAACTCTCTAAGAAGTGTGTTTGAAAACTATGCCGTGGCTGATGCGCCATCTGAGGTCCCCGATCATCTTTGTTGTAAAATTACGCTCGATATTCTTCGTGATCCCGTTATTACTCCGAGCGGGGTTACATATGAGAGAGCAGTGATCCTCGACCATTTTCGAAAGGTTGGTAACTTCGATCCCATAACGCGGGAGCTACTCGACGAGTCTCAGCTAGTACCGAACTTGGCCATAAAGGAAGCTGTACAAGCATTTCTAGATAAGCATGGATGGGCTTACAATACAAATTAA 846 45.98 MGPGVFLSGAARQAEILRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDNNSVKAHYMVGLALIQNKDYPEGIKHLEKALDLGRGANQKSYMVEEIWQELANAKYREWEQASTKRSWELQTLKEACEAALEQKYFLDQSEPEGFVDQAEIAHREQLNSLRSVFENYAVADAPSEVPDHLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQAFLDKHGWAYNTN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1235181 1241315 + Cp4.1LG15g01460.1 Cpe15g00149 481607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00149 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Cpe15g00149 281 SUPERFAMILY TPR-like 13 134 IPR011990 GO:0005515
Cpe15g00149 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Cpe15g00149 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Cpe15g00149 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Cpe15g00149 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Cpe15g00149 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Cpe15g00149 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Cpe15g00149 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515
Cpe15g00149 281 SUPERFAMILY RING/U-box 195 278 - -
Cpe15g00149 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Cpe15g00149 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515
Cpe15g00149 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Cpe15g00149 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cpe15g00149 281 PANTHER OS08G0113300 PROTEIN 9 280 - -
Cpe15g00149 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Cpe15g00149 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00149 Cpe-Chr15:1235181 Cpe16g00136 Cpe-Chr16:3117721 6.37E-10 dispersed
Cpe15g00149 Cpe-Chr15:1235181 Cpe05g00132 Cpe-Chr5:673634 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00149 K09561 - csv:101215457 516.924