Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00150 ATGGAGAGTATTTTGTCGGCTTTTTCTGTTCATGTTGCAGTGATCGTCGCCTTCCTCTCCGATCTTGATGGCGAAAACGGGGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACAGAGACTTATCGATGCTATAATTGATGATGATAATTGCTCTACCGACACCATCGATCATGCTAAAGAGATTATTTCTGCGCTCAAGGAGTTGAAACTTAGGAAGAGATCACGCTCTTCTAATCGTTACGAGAATCTCATTTGCCCTGATGAATTTCGTTGTCCGCTTTCTAGGGAACTCATGAGAGATCCTGTCGTTGTGTCTACTGGCGAGACATATGACAGACCTTTCATTCATAAATGGTTAAGATCAGGAAACCGAACGTGTCCGAGAACTCAGCAAGTTCTTTCGCACACGAACCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTAGGGGAATTGAGTTGCAAGATCGTGTCCGTGTGCATTGTCTTGAAGACGATGTGATAACCGAGGCTGATAGAGACCGTTTTCTCACGCTAATAGAGAATATGTCTATGACAATACCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGTATGTTGACGAAGAGAATGCCCTCATTTCGAGCGCTTTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTAGTATTCATGCGGATCTGCAAGAGGATGTGATCACAACCCTCTTGAATCTGTCGATCCATGACAACAACAAGAAGCTTGTAGCTGAAACTCCCAATGTAATACCGCTTCTAAAGGAAGCGTTGAGATCAGGAACCATGGAAACGAGGAGCAATGCAGCTGCAGCCCTATTTACTCTGTCAGCTCTCGATTCGAACAAAGCACTCATTGGAAAATCTGGTGCCTTGAAGCCCCTTATCGACCTTTTAGACGAGGGGCATCCTTTATCTATGAAGGATGCTGCTTCAGCCATATTTAATCTTTGTATACTTCATGAAAATAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATTATGAACCAAATGCATGTTGATGAACTGTTGGCTATTCTTGCAATGCTTTCAAGCCATCAAAAGGCGGTCGAAGAAATCGGAGAGCTGGGAGCTGTCCCTTCCTTATTCAGAATTATCAGGGAAAGTTCTTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAAGATATGAAGGAGGAGGAGAAATGGTATCGAACTATCTCTGAACTCGCTCAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTAAACAGGGCAGTTAATATGACCCATACTGCGTAA 1422 44.02 MESILSAFSVHVAVIVAFLSDLDGENGVMGKATELKRELQRLIDAIIDDDNCSTDTIDHAKEIISALKELKLRKRSRSSNRYENLICPDEFRCPLSRELMRDPVVVSTGETYDRPFIHKWLRSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVRVHCLEDDVITEADRDRFLTLIENMSMTIPEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSIHADLQEDVITTLLNLSIHDNNKKLVAETPNVIPLLKEALRSGTMETRSNAAAALFTLSALDSNKALIGKSGALKPLIDLLDEGHPLSMKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSSHQKAVEEIGELGAVPSLFRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMKEEEKWYRTISELAQNGTSRAKRKASGILERLNRAVNMTHTA 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1241927 1247027 - Cp4.1LG15g01490.1 Cpe15g00150 481608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00150 473 SUPERFAMILY ARM repeat 196 463 IPR016024 -
Cpe15g00150 473 CDD RING-Ubox_PUB 91 133 IPR045210 -
Cpe15g00150 473 Gene3D - 223 367 IPR011989 -
Cpe15g00150 473 SMART Ubox_2 90 153 IPR003613 GO:0004842|GO:0016567
Cpe15g00150 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
Cpe15g00150 473 Pfam U-box domain 88 157 IPR003613 GO:0004842|GO:0016567
Cpe15g00150 473 SUPERFAMILY RING/U-box 84 163 - -
Cpe15g00150 473 ProSiteProfiles U-box domain profile. 86 160 IPR003613 GO:0004842|GO:0016567
Cpe15g00150 473 PANTHER U BOX DOMAIN-CONTAINING 24 471 - -
Cpe15g00150 473 Pfam Armadillo/beta-catenin-like repeat 304 340 IPR000225 GO:0005515
Cpe15g00150 473 Gene3D - 368 471 IPR011989 -
Cpe15g00150 473 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 24 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00821 Cpe-Chr7:7428581 Cpe15g00150 Cpe-Chr15:1241927 2.66E-119 dispersed
Cpe15g00150 Cpe-Chr15:1241927 Cpe02g01239 Cpe-Chr2:11139117 6.96E-92 dispersed
Cpe15g00150 Cpe-Chr15:1241927 Cpe05g00133 Cpe-Chr5:680661 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00150 - - csv:101215688 752.281