Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00172 ATGGGGAAGAACAAAGTGTTGATAATTGGAGGAACAGGGTACTTGGGGAAGAGATTGGTGAGGGCAAGTTTGAGGTTAGGGTATCAAACCTATGTGTTACAAAGGCAAGAAATGGGCGTTGATATAGAGAAAGTGGAGCTTCTTTTGTCATTCAAGAGAGAAGGAGCCCATTTGGTTTGTGCTTCTTTTAATGATCATAACAGCCTTGTTGAGGCTGTCAAGCTTGTGGATGTTGTCATTTCTGCTATCTCTGGTGTTCATATTAGATCTCATCATATTCTTCTTCAACTCAACCTTGTTCATGCCATCAAGGAGGCTCCAAATGTTAAGAGATTTTTACCGTCGGAGTTCGGGACCGACCCGGCGAGAATGAAGAACGCGATGGAGCCGGGGAGGGTGACGTTTGATGATAAAATGGTGGTGAGGAAAGCCATAGAAGAAGCTAAAATCCCTTTCACTTACATCTCTGCAAACTGTTTTGCTGGTTACTTTCTTGGTGGTTTATGTCAACCTGGCTTCATCCTTCCTTCCAAACATCATGTTTCTCTCCTTGGAGATGGCAATCAAAAAGCAATATACGTGGATGAAGACGACATTGCAACATACACCATGAAGACGATTGACGACCCTCGAACCCTAAACAAAACGGTGTACATAAGGCCACCCGAGAACATATTATCACAAAGAGAAGTCGTTGAGATTTGGGAGAAATTGATAGGAAAAGAGCTCACAAAGAGCTCCATTTCTGATCAAGAGTTTCTAGCTAACATGAAAGGTCAAGGCTATGCAGAGCAAGTGGGGCTAACTCACTATTATCATGTATGCTTTGAGGGATGTCTTGCCAACTTTGAAATAGGGGATGGTGCTGAAGAAGCTTGCAGTCTCTATCCAGAAGTTAGCTACACAAGTGTGGAGGAATACATGAAACGCTACGTTTAA 939 42.92 MGKNKVLIIGGTGYLGKRLVRASLRLGYQTYVLQRQEMGVDIEKVELLLSFKREGAHLVCASFNDHNSLVEAVKLVDVVISAISGVHIRSHHILLQLNLVHAIKEAPNVKRFLPSEFGTDPARMKNAMEPGRVTFDDKMVVRKAIEEAKIPFTYISANCFAGYFLGGLCQPGFILPSKHHVSLLGDGNQKAIYVDEDDIATYTMKTIDDPRTLNKTVYIRPPENILSQREVVEIWEKLIGKELTKSSISDQEFLANMKGQGYAEQVGLTHYYHVCFEGCLANFEIGDGAEEACSLYPEVSYTSVEEYMKRYV 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1418327 1421643 - Cp4.1LG15g01760.1 Cpe15g00172 481630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00172 312 Gene3D - 5 297 - -
Cpe15g00172 312 Gene3D - 158 308 - -
Cpe15g00172 312 PANTHER BIFUNCTIONAL PINORESINOL-LARICIRESINOL REDUCTASE-LIKE 2 311 - -
Cpe15g00172 312 CDD PCBER_SDR_a 5 307 IPR045312 GO:0016491
Cpe15g00172 312 PANTHER PINORESINOL REDUCTASE-RELATED 2 311 - -
Cpe15g00172 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 269 IPR036291 -
Cpe15g00172 312 Pfam NmrA-like family 6 242 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00172 K21568 PLR; pinoresinol/lariciresinol reductase [EC:1.23.1.1 1.23.1.2 1.23.1.3 1.23.1.4] - csv:101212644 543.888
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00172 Cpe-Chr15:1418327 Cpe15g00177 Cpe-Chr15:1447840 4.66E-131 dispersed
Cpe15g00172 Cpe-Chr15:1418327 Cpe15g00174 Cpe-Chr15:1426395 3.71E-138 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0518 . . . . . . . . . . . . . . . . . Cmo19g00215 . . . . . Cpe15g00172 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002260 2 2 2 1 2 2 0 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 1 2 0 2 2 3 6 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe15g00172 Cpe_Chr15 FPKM 9.210417 11.922071 9.977459 9.581345 13.043438 11.025602 15.432232 24.059216 25.698727 24.327957