Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00178 ATGGAGCGGAACTATCCGTATGAGAATGGAGTGATGATGACGAGAGACACGAAGCCAAGACTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAACTCGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGTCATTTACAGAAGTATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAGGAATGAATGTAGTGGGACTCTGAGCAACTTCATTGGAGTTGAGGAAGATGAGAGGGGGATGAAAATTGCTGAGGCACTAAAATCACATGTTGATGTGCAGAAAACAATACTAGAACAACTTGAGGTACAAAATAAACTACAAATGAGAATAGAAGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACAGTGACCTTGGTAGTCTTGAAAGCACAGGAATGCAGCTATTAGGCTTTGACGTGGCTTTGTCAGATCAAATGGAAAAAATTAAGAAACAAGAAATGAGAGGAAGCATGACGACTGTAAACGATACTTGTAAGAAGACGGGCGACTCACCCATCCAGATGTGCAAAGTGGAAGCTGGAGAAGAAGACACAAACGAGTTTAATGTTGAAAGGAATATGATCAACTTTGATTTGAATTCAAAAGGTGGCTATGATTACAGTTCAAATGGGGCCGAAATACTCGAGGCCAAAGTGCTTCCTTGTTCGAGGTAA 783 42.02 MERNYPYENGVMMTRDTKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNECSGTLSNFIGVEEDERGMKIAEALKSHVDVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSDLGSLESTGMQLLGFDVALSDQMEKIKKQEMRGSMTTVNDTCKKTGDSPIQMCKVEAGEEDTNEFNVERNMINFDLNSKGGYDYSSNGAEILEAKVLPCSR 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1452963 1456534 - Cp4.1LG15g01790.1 Cpe15g00178 481636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00178 260 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Cpe15g00178 260 SUPERFAMILY Homeodomain-like 17 75 IPR009057 -
Cpe15g00178 260 Gene3D - 17 74 - -
Cpe15g00178 260 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Cpe15g00178 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 - -
Cpe15g00178 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cpe15g00178 260 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Cpe15g00178 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 247 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe15g00178 Cpe-Chr15:1452963 Cpe15g00910 Cpe-Chr15:8713480 6.16E-48 dispersed
Cpe15g00178 Cpe-Chr15:1452963 Cpe05g00146 Cpe-Chr5:764259 7.63E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50591 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00178 - - cmax:111466876 500.745