Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00179 ATGGCACCACTGCTAAACGATCAATTCAGTTTTCAAACGCCAGAAAGTCAGACTGTCCAGACTAAAAAAATCCCCAACAAGTATCCTGGCTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTCCATGCCTCTAGAGACTTGCCCACTGATCCATTTCTTGATGTTGCCTCTTATATCCTCTCCTTCCAACACAATGGTCGTTCAGCTCTCATTGATTCCTCCACTGGACATTCAATATCTTACAGGGAATTGTATCGTATGGTGAATTCCATGGCTTCTGGGCTCCAAAAATTGGGTGTTTCACAAGGGGATGTAGTCTTGCTTCTGTTACCAAATTCCATTTTCTATCCCATTGTTCTTCTGGGTGTGCTGTATTTGGGAGCTGTTATTACAACCATGTTTCCTCAAAGCAGTTCTCAAGAAATCAAGAAACGAATCAGTGAATGCAATGTGCGGCTGGCTTTTGCAACACCACAGAATGTTGGGAACTTTGAAGCATTGGGAGTTCAGGCAATTGGAGTACCAGAAAATACGAATTTGGACTTAATGAGGCCTATGGGATTTTCTTCTTTTTATGAGCTTATTTCAGGTGGTTTAGATTTGAATAAAAGACCTGTGATTAGACAGGAAGATACAGCTGCTATATTGTTTTCTTCTGGTACGACTGGAGTGAGCAAAGGGGTTCTGTTGACACATAGAAACTTTATATCTACGGTCGAGCTTTTTGTTCGGTTTGAAGCTTCGCAGTATGAGTATTTGACTACCGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATGTGTATGGTCTCTCCATTTTTGTGATGGGATTATTGTCATTGGGGTCTAGTATTGTTGTAATGAGCAAATTCGATGTCAAAGAGGTGGTCATGGCCATTGATAGATTTAAAGTTACACATTTTCCTGTTGTTCCGCCAATAATGATACTTATGGCTAGGACTGCAGGGAAATTTGGTGGGCACAAATTTCGTAGTTTGAAACAGGTTTCTTGTGGGGCTGCTTCTTTGAGTAAGAAGATCATAGGGGATTTTGTGCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAAACCACAGCCGTTGGCACCCGTGGCTTCAATACCAAAAAGGCTCAAAACTATTTGTCTGTTGGACTCTTAGCACCAAACATGGAAGCTAAAGTTGTTGATTGGGTTAGCGGATCTATCATGCCGCCTGGTAAAACCGGCGAACTTTTGTTACGCGGACCTGGTTTAATGAAAGGGTACTTGAATAATCCCGAGGCAACAATGTCCACAATAGACCAAGAAAATTGGCTACATACTGGAGACATCGTCTACTTTGACCGAGATGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAGTATAAGGGCTTTCAGATTCCAGTGGCATTTGTGGTGAAAAAGCCAGGAAGCTCACTCTCACAGAAAGATGTCATCGATTATGTTGCTCAACAGGTTGCGCCGTATAAAAAGATCAGAAAAGTGGTGTTTACAGAATCAATACCCAAATCTGCTGCTGGCAAAGTACTGCGTAAGGAACTGGGGAAGCACTTGCCGTCTAAACTCTGA 1617 42.12 MAPLLNDQFSFQTPESQTVQTKKIPNKYPGWYSPDTGICRSVHASRDLPTDPFLDVASYILSFQHNGRSALIDSSTGHSISYRELYRMVNSMASGLQKLGVSQGDVVLLLLPNSIFYPIVLLGVLYLGAVITTMFPQSSSQEIKKRISECNVRLAFATPQNVGNFEALGVQAIGVPENTNLDLMRPMGFSSFYELISGGLDLNKRPVIRQEDTAAILFSSGTTGVSKGVLLTHRNFISTVELFVRFEASQYEYLTTENVYLAAIPMFHVYGLSIFVMGLLSLGSSIVVMSKFDVKEVVMAIDRFKVTHFPVVPPIMILMARTAGKFGGHKFRSLKQVSCGAASLSKKIIGDFVQALPHVDFIQGYGMTETTAVGTRGFNTKKAQNYLSVGLLAPNMEAKVVDWVSGSIMPPGKTGELLLRGPGLMKGYLNNPEATMSTIDQENWLHTGDIVYFDRDGYLYVVDRLKEVIKYKGFQIPVAFVVKKPGSSLSQKDVIDYVAQQVAPYKKIRKVVFTESIPKSAAGKVLRKELGKHLPSKL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1464272 1473627 + Cp4.1LG15g01680.1 Cpe15g00179 481637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00179 538 Pfam AMP-binding enzyme C-terminal domain 472 524 IPR025110 -
Cpe15g00179 538 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 476 536 - -
Cpe15g00179 538 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 23 476 - -
Cpe15g00179 538 SUPERFAMILY Acetyl-CoA synthetase-like 64 534 - -
Cpe15g00179 538 Gene3D - 468 535 IPR045851 -
Cpe15g00179 538 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Cpe15g00179 538 CDD 4CL 48 530 - -
Cpe15g00179 538 Pfam AMP-binding enzyme 64 471 IPR000873 -
Cpe15g00179 538 Gene3D - 51 467 IPR042099 -
Cpe15g00179 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 476 536 - -
Cpe15g00179 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 23 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00196 Cpe-Chr3:982403 Cpe15g00179 Cpe-Chr15:1464272 9.31E-19 dispersed
Cpe06g00035 Cpe-Chr6:175728 Cpe15g00179 Cpe-Chr15:1464272 1.19E-15 dispersed
Cpe09g00974 Cpe-Chr9:8675363 Cpe15g00179 Cpe-Chr15:1464272 2.65E-81 dispersed
Cpe15g00179 Cpe-Chr15:1464272 Cpe17g00550 Cpe-Chr17:4546617 8.54E-23 dispersed
Cpe15g00179 Cpe-Chr15:1464272 Cpe20g00318 Cpe-Chr20:1796227 1.01E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00179 K01904 - csv:101219578 878.626